Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4259238..4259383 | Replicon | chromosome |
| Accession | NZ_CP063871 | ||
| Organism | Klebsiella pneumoniae strain S141 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4259274..4259376 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4259238..4259383 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IRJ19_RS20565 | 4254368..4256428 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| IRJ19_RS20570 | 4256432..4257091 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| IRJ19_RS20575 | 4257170..4257400 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| IRJ19_RS20580 | 4257513..4257887 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| IRJ19_RS20585 | 4257891..4258760 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| IRJ19_RS20590 | 4258777..4259115 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4259238..4259383 | - | 146 | - | - | Antitoxin |
| - | 4259274..4259376 | + | 103 | - | - | Toxin |
| IRJ19_RS20595 | 4259751..4259894 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| IRJ19_RS20600 | 4259999..4260967 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| IRJ19_RS20605 | 4261124..4261777 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| IRJ19_RS20610 | 4261774..4261965 | - | 192 | WP_002911395.1 | YebW family protein | - |
| IRJ19_RS20615 | 4262063..4262302 | - | 240 | WP_002911393.1 | YebV family protein | - |
| IRJ19_RS20620 | 4262418..4263851 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179103 NZ_CP063871:4259274-4259376 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT179103 NZ_CP063871:c4259383-4259238 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
