Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 316795..316939 | Replicon | chromosome |
| Accession | NZ_CP063867 | ||
| Organism | Klebsiella variicola strain M142-3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 316831..316933 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 316795..316939 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISD32_RS01510 | 311925..313985 | + | 2061 | WP_110223695.1 | oligopeptidase B | - |
| ISD32_RS01515 | 313989..314648 | - | 660 | WP_012541259.1 | exodeoxyribonuclease X | - |
| ISD32_RS01520 | 314727..314957 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| ISD32_RS01525 | 315071..315445 | + | 375 | WP_038421459.1 | CopC domain-containing protein YobA | - |
| ISD32_RS01530 | 315449..316318 | + | 870 | WP_110223697.1 | copper homeostasis membrane protein CopD | - |
| ISD32_RS01535 | 316335..316673 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 316795..316939 | - | 145 | - | - | Antitoxin |
| - | 316831..316933 | + | 103 | - | - | Toxin |
| ISD32_RS01540 | 317318..317461 | - | 144 | WP_142667623.1 | Ecr family regulatory small membrane protein | - |
| ISD32_RS01545 | 317565..318533 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| ISD32_RS01550 | 318690..319343 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| ISD32_RS01555 | 319340..319531 | - | 192 | WP_002911395.1 | YebW family protein | - |
| ISD32_RS01560 | 319629..319868 | - | 240 | WP_002911393.1 | YebV family protein | - |
| ISD32_RS01565 | 319984..321417 | - | 1434 | WP_110223699.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179072 NZ_CP063867:316831-316933 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT179072 NZ_CP063867:c316939-316795 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
