Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1345400..1345545 | Replicon | chromosome |
| Accession | NZ_CP063865 | ||
| Organism | Klebsiella pneumoniae strain S130-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1345407..1345509 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1345400..1345545 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IOD48_RS06920 | 1340932..1342365 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IOD48_RS06925 | 1342481..1342720 | + | 240 | WP_002911393.1 | YebV family protein | - |
| IOD48_RS06930 | 1342818..1343009 | + | 192 | WP_002911395.1 | YebW family protein | - |
| IOD48_RS06935 | 1343006..1343659 | - | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| IOD48_RS06940 | 1343816..1344784 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| IOD48_RS06945 | 1344889..1345032 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 1345400..1345545 | + | 146 | - | - | Antitoxin |
| - | 1345407..1345509 | - | 103 | - | - | Toxin |
| IOD48_RS06950 | 1345668..1346006 | - | 339 | WP_002911404.1 | YebY family protein | - |
| IOD48_RS06955 | 1346023..1346892 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| IOD48_RS06960 | 1346896..1347270 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| IOD48_RS06965 | 1347383..1347613 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| IOD48_RS06970 | 1347692..1348351 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| IOD48_RS06975 | 1348355..1350415 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179050 NZ_CP063865:c1345509-1345407 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT179050 NZ_CP063865:1345400-1345545 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
