Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3478595..3478740 | Replicon | chromosome |
| Accession | NZ_CP063863 | ||
| Organism | Klebsiella pneumoniae strain M63-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3478631..3478733 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3478595..3478740 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IOD47_RS16620 | 3473725..3475785 | + | 2061 | WP_130972366.1 | oligopeptidase B | - |
| IOD47_RS16625 | 3475789..3476448 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| IOD47_RS16630 | 3476527..3476757 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| IOD47_RS16635 | 3476870..3477244 | + | 375 | WP_130972367.1 | CopC domain-containing protein YobA | - |
| IOD47_RS16640 | 3477248..3478117 | + | 870 | WP_200995458.1 | copper homeostasis membrane protein CopD | - |
| IOD47_RS16645 | 3478134..3478472 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 3478595..3478740 | - | 146 | - | - | Antitoxin |
| - | 3478631..3478733 | + | 103 | - | - | Toxin |
| IOD47_RS16650 | 3479109..3479252 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| IOD47_RS16655 | 3479357..3480325 | - | 969 | WP_074185275.1 | DUF535 family protein | - |
| IOD47_RS16660 | 3480482..3481135 | + | 654 | WP_032447686.1 | protein-serine/threonine phosphatase | - |
| IOD47_RS16665 | 3481132..3481323 | - | 192 | WP_002911395.1 | YebW family protein | - |
| IOD47_RS16670 | 3481421..3481660 | - | 240 | WP_002911393.1 | YebV family protein | - |
| IOD47_RS16675 | 3481776..3483209 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179039 NZ_CP063863:3478631-3478733 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT179039 NZ_CP063863:c3478740-3478595 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
