Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4527221..4527366 | Replicon | chromosome |
| Accession | NZ_CP063851 | ||
| Organism | Klebsiella pneumoniae strain M1023-4Ar | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4527257..4527359 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4527221..4527366 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IOD43_RS21820 | 4522351..4524411 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| IOD43_RS21825 | 4524415..4525074 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| IOD43_RS21830 | 4525153..4525383 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| IOD43_RS21835 | 4525496..4525870 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| IOD43_RS21840 | 4525874..4526743 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| IOD43_RS21845 | 4526760..4527098 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4527221..4527366 | - | 146 | - | - | Antitoxin |
| - | 4527257..4527359 | + | 103 | - | - | Toxin |
| IOD43_RS21850 | 4527735..4527878 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| IOD43_RS21855 | 4527983..4528951 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| IOD43_RS21860 | 4529108..4529761 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| IOD43_RS21865 | 4529758..4529949 | - | 192 | WP_002911395.1 | YebW family protein | - |
| IOD43_RS21870 | 4530047..4530286 | - | 240 | WP_002911393.1 | YebV family protein | - |
| IOD43_RS21875 | 4530402..4531835 | - | 1434 | WP_194315361.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T178969 NZ_CP063851:4527257-4527359 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT178969 NZ_CP063851:c4527366-4527221 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
