Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yafQ-relB/YafQ-RelB
Location 3893984..3894511 Replicon chromosome
Accession NZ_CP063849
Organism Paludibaculum fermentans strain P105

Toxin (Protein)


Gene name yafQ Uniprot ID -
Locus tag IRI77_RS15235 Protein ID WP_194452898.1
Coordinates 3894245..3894511 (+) Length 89 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag IRI77_RS15230 Protein ID WP_194453670.1
Coordinates 3893984..3894241 (+) Length 86 a.a.

Genomic Context

IRI77_RS15230IRI77_RS15235IRI77_RS15245IRI77_RS15220IRI77_RS15225IRI77_RS15240
Location: 3893984..3894241 (258 bp)
Type: Antitoxin
Protein ID: WP_194453670.1
Location: 3894245..3894511 (267 bp)
Type: Toxin
Protein ID: WP_194452898.1
Location: 3897733..3898803 (1071 bp)
Type: Others
Protein ID: WP_194452900.1
Location: 3889547..3892375 (2829 bp)
Type: Others
Protein ID: WP_194452896.1
Location: 3892563..3893228 (666 bp)
Type: Others
Protein ID: WP_194452897.1
Location: 3894646..3897129 (2484 bp)
Type: Others
Protein ID: WP_194452899.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
IRI77_RS152203889547..3892375-2829WP_194452896.1insulinase family protein-
IRI77_RS152253892563..3893228-666WP_194452897.1hypothetical protein-
IRI77_RS152303893984..3894241+258WP_194453670.1type II toxin-antitoxin system RelB/DinJ family antitoxinAntitoxin
IRI77_RS152353894245..3894511+267WP_194452898.1type II toxin-antitoxin system YafQ family toxinToxin
IRI77_RS152403894646..3897129-2484WP_194452899.1erythromycin esterase family protein-
IRI77_RS152453897733..3898803+1071WP_194452900.1IS110 family transposase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(8-88)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(2-84)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10196.78 Da        Isoelectric Point: 8.9632

>T178958 WP_194452898.1 NZ_CP063849:3894245-3894511 [Paludibaculum fermentans]
VRNPITGAQFGRDVKLARKRGKDMAKLHDVILLLIEGSPLPSRYKDHTLGGEWKHFRDCHIQPDWLLIYKIEGEDLYLVR
TGTHSDLF

Download         Length: 267 bp

>T178958 NZ_CP084437:440554-440766 [Staphylococcus lugdunensis]
GTGGAAAAGCGATTAATTTATATTACAAATGTGACTAATGAAGACGACTTGGAAAACTTACGAACAAGGTTATTAGAGAT
GATTGGTGTTAATGAAGTAGTGATCAATTTTGATGAACGTGCAGTTAATGTTACTTTCGAAACATCAACTAATTTAAATG
CACTTGAAAAAGAAATATATGATGCTGGCTATCATGCTATAGATGATTTATAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9255.98 Da        Isoelectric Point: 11.1195

>AT178958 WP_194453670.1 NZ_CP063849:3893984-3894241 [Paludibaculum fermentans]
IMSTTMIHVRVDEKTKQRATKTLAAMGISVSDAVRMLLVRVVAEKALPFEVKVPNATTVKAMRAADKGQGKRQKSGDTLF
KDLGI

Download         Length: 258 bp

>AT178958 NZ_CP084437:440248-440541 [Staphylococcus lugdunensis]
TTGAACGAACAAGATCATGCACATCATTCTAAAATTGTAAAAGCAAATTTAAAATCTAGATTAAATCGTATAGAAGGACA
AGTGCGGGCAATTAATCGCATGGTTGAAGATGATGTTTATTGTGATGATGTGTTAACACAAATAAGAGCAACACGCTCAG
CATTAACGAGTGTAGCAACAAAACTATTAGAGCATCATATGAAAAGTTGTATCATGGATAAAATAAACGATGGGCAGGAA
GTTGAAGCGATGGAGGAATTGCTAGTTACATTTCAAAAGATGCTAAAAGACTAG

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References