Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/PIN(toxin) |
| Location | 3129392..3130079 | Replicon | chromosome |
| Accession | NZ_CP063804 | ||
| Organism | Mycobacterium orygis strain MUHC/MB/EPTB/Orygis/51145 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | P65044 |
| Locus tag | RJtmp_RS14975 | Protein ID | WP_003414624.1 |
| Coordinates | 3129636..3130079 (+) | Length | 148 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | G0TFH0 |
| Locus tag | RJtmp_RS14970 | Protein ID | WP_003414620.1 |
| Coordinates | 3129392..3129649 (+) | Length | 86 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| - | 3129392..3129649 | + | 258 | - | - | Antitoxin |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 148 a.a. Molecular weight: 16595.72 Da Isoelectric Point: 6.4890
>T178892 WP_003414624.1 NZ_CP063804:3129636-3130079 [Mycobacterium orygis]
MLCVDVNVLVYAHRADLREHADYRGLLERLANDDEPLGLPDSVLAGFIRVVTNRRVFTEPTSPQDAWQAVDALLAAPAAM
RLRPGERHWMAFRQLASDVDANGNDIADAHLAAYALENNATWLSADRGFARFRRLRWRHPLDGQTHL
MLCVDVNVLVYAHRADLREHADYRGLLERLANDDEPLGLPDSVLAGFIRVVTNRRVFTEPTSPQDAWQAVDALLAAPAAM
RLRPGERHWMAFRQLASDVDANGNDIADAHLAAYALENNATWLSADRGFARFRRLRWRHPLDGQTHL
Download Length: 444 bp
>T178892 NZ_CP084405:1423421-1423843 [Sphingobium sp. CFD-2]
ATGATCGTTCTGGACACCAATGTCGTTTCCGAGGCGATGAAGCCGGAACCGGCGCCCGCCGTGCGCGACTGGCTGGATGA
GCAGGCCGCCGAAACCCTCTATCTCTCCAGCGTCACCGTCGCGGAACTCCTGTTCGGCATCGGCGCGCTGCCGGACGGGC
AGCGCAAGCGGAAGCTCGCCGCAACCCTCGACGGGCTTCTCGGCCTGTTCGACGGCAGAATCCTTCCCTTCGATACGGAT
GCCGCTCGCCGCTATGCCGACCTCGCCGTTGCGGCGCGCAACGCGGGCAAGGGTTTTCCGACGCCGGACGGTTACATCGC
GGCCATCGCGACTGCCCATGGCTTTGCAGTCGCCACGCGCGATGCCAGCGCCTTCAAGGCGGCGGGTGTCCCGATCATCG
ACCCTTGGACGGCCGGGCACTGA
ATGATCGTTCTGGACACCAATGTCGTTTCCGAGGCGATGAAGCCGGAACCGGCGCCCGCCGTGCGCGACTGGCTGGATGA
GCAGGCCGCCGAAACCCTCTATCTCTCCAGCGTCACCGTCGCGGAACTCCTGTTCGGCATCGGCGCGCTGCCGGACGGGC
AGCGCAAGCGGAAGCTCGCCGCAACCCTCGACGGGCTTCTCGGCCTGTTCGACGGCAGAATCCTTCCCTTCGATACGGAT
GCCGCTCGCCGCTATGCCGACCTCGCCGTTGCGGCGCGCAACGCGGGCAAGGGTTTTCCGACGCCGGACGGTTACATCGC
GGCCATCGCGACTGCCCATGGCTTTGCAGTCGCCACGCGCGATGCCAGCGCCTTCAAGGCGGCGGGTGTCCCGATCATCG
ACCCTTGGACGGCCGGGCACTGA
Antitoxin
Download Length: 86 a.a. Molecular weight: 9013.22 Da Isoelectric Point: 10.8344
>AT178892 WP_003414620.1 NZ_CP063804:3129392-3129649 [Mycobacterium orygis]
VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLRPGVDLSSNAALAEAMNDGVS
VDAVR
VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLRPGVDLSSNAALAEAMNDGVS
VDAVR
Download Length: 258 bp
>AT178892 NZ_CP084405:1423170-1423424 [Sphingobium sp. CFD-2]
ATGCCCGCCGTCACCATTCGCAACCTGTCAGACGAGGCGCACCGCGCCCTCAAGGTGCGCGCGGCCCATCATGGTCGCAG
CACCGAGGCCGAAATCCGCGATATTCTGGAAGAGGCGGTGCGTCCCGCCAACCGCCTGCGCATCGGTTCCGCCATGGCGG
CGTTGAGCCGGGAGGCAGGCTTGACCAATGCCGATTTCGAGGCGCTGGAACAGAGCCGCGACCGGACGCCCGCCGTGCCT
ATGAGCTTTGAATGA
ATGCCCGCCGTCACCATTCGCAACCTGTCAGACGAGGCGCACCGCGCCCTCAAGGTGCGCGCGGCCCATCATGGTCGCAG
CACCGAGGCCGAAATCCGCGATATTCTGGAAGAGGCGGTGCGTCCCGCCAACCGCCTGCGCATCGGTTCCGCCATGGCGG
CGTTGAGCCGGGAGGCAGGCTTGACCAATGCCGATTTCGAGGCGCTGGAACAGAGCCGCGACCGGACGCCCGCCGTGCCT
ATGAGCTTTGAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|