Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relE-vapB/YoeB-MazE |
| Location | 1937953..1938572 | Replicon | chromosome |
| Accession | NZ_CP063659 | ||
| Organism | Synechocystis sp. PCC 7339 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | IQE94_RS09180 | Protein ID | WP_212717675.1 |
| Coordinates | 1938303..1938572 (-) | Length | 90 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | - |
| Locus tag | IQE94_RS09175 | Protein ID | WP_212717673.1 |
| Coordinates | 1937953..1938180 (-) | Length | 76 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IQE94_RS09125 (IQE94_09020) | 1933204..1934055 | - | 852 | WP_212717663.1 | RMD1 family protein | - |
| IQE94_RS09130 (IQE94_09025) | 1934169..1934810 | - | 642 | WP_194017876.1 | hypothetical protein | - |
| IQE94_RS09135 (IQE94_09030) | 1935074..1935409 | - | 336 | WP_212717664.1 | DUF86 domain-containing protein | - |
| IQE94_RS09140 (IQE94_09035) | 1935399..1935737 | - | 339 | WP_212717665.1 | nucleotidyltransferase domain-containing protein | - |
| IQE94_RS09145 (IQE94_09040) | 1935829..1935996 | - | 168 | WP_212717666.1 | DUF86 domain-containing protein | - |
| IQE94_RS09150 (IQE94_09045) | 1935986..1936153 | - | 168 | WP_223343214.1 | nucleotidyltransferase domain-containing protein | - |
| IQE94_RS09155 (IQE94_09050) | 1936158..1936493 | - | 336 | WP_212717667.1 | DUF86 domain-containing protein | - |
| IQE94_RS09160 (IQE94_09055) | 1936477..1936797 | - | 321 | WP_223341787.1 | nucleotidyltransferase family protein | - |
| IQE94_RS09165 (IQE94_09060) | 1937185..1937415 | - | 231 | WP_212717668.1 | hypothetical protein | - |
| IQE94_RS09170 (IQE94_09065) | 1937551..1937889 | - | 339 | WP_249213932.1 | type II toxin-antitoxin system VapC family toxin | - |
| IQE94_RS09175 (IQE94_09070) | 1937953..1938180 | - | 228 | WP_212717673.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin |
| IQE94_RS09180 (IQE94_09075) | 1938303..1938572 | - | 270 | WP_212717675.1 | Txe/YoeB family addiction module toxin | Toxin |
| IQE94_RS09185 (IQE94_09080) | 1938553..1938825 | - | 273 | WP_212717677.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| IQE94_RS09190 (IQE94_09085) | 1938842..1941160 | - | 2319 | WP_223341788.1 | N-6 DNA methylase | - |
| IQE94_RS09195 (IQE94_09090) | 1941619..1941831 | - | 213 | WP_212717679.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| IQE94_RS09200 (IQE94_09095) | 1941828..1942049 | - | 222 | WP_212717680.1 | type II toxin-antitoxin system HicA family toxin | - |
| IQE94_RS09205 (IQE94_09100) | 1942109..1942345 | - | 237 | WP_212717685.1 | DUF2283 domain-containing protein | - |
| IQE94_RS09210 (IQE94_09105) | 1942332..1942613 | - | 282 | WP_212717687.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 90 a.a. Molecular weight: 10710.38 Da Isoelectric Point: 9.7479
>T178680 WP_212717675.1 NZ_CP063659:c1938572-1938303 [Synechocystis sp. PCC 7339]
MRYLVFEGNTWETYEELRQKDKILHKNLCKLIKEMLRGDPAKGTGKPEPLKHNLSGLWSRRISQKDRLIYKFDDKYIYIF
AIGGHYNEY
MRYLVFEGNTWETYEELRQKDKILHKNLCKLIKEMLRGDPAKGTGKPEPLKHNLSGLWSRRISQKDRLIYKFDDKYIYIF
AIGGHYNEY
Download Length: 270 bp
>T178680 NZ_CP063659:c1938572-1938303 [Synechocystis sp. PCC 7339]
ATGAGATACTTGGTTTTTGAAGGAAATACTTGGGAAACTTACGAAGAGCTTCGGCAGAAGGATAAAATTTTGCACAAAAA
TCTCTGTAAACTTATTAAAGAAATGCTGAGAGGAGATCCCGCCAAAGGTACCGGAAAACCTGAGCCACTCAAGCACAATT
TGTCGGGATTATGGTCAAGACGCATTTCCCAGAAAGACCGTCTTATCTATAAGTTTGACGACAAATATATTTACATTTTT
GCCATTGGTGGCCATTACAATGAGTACTAA
ATGAGATACTTGGTTTTTGAAGGAAATACTTGGGAAACTTACGAAGAGCTTCGGCAGAAGGATAAAATTTTGCACAAAAA
TCTCTGTAAACTTATTAAAGAAATGCTGAGAGGAGATCCCGCCAAAGGTACCGGAAAACCTGAGCCACTCAAGCACAATT
TGTCGGGATTATGGTCAAGACGCATTTCCCAGAAAGACCGTCTTATCTATAAGTTTGACGACAAATATATTTACATTTTT
GCCATTGGTGGCCATTACAATGAGTACTAA
Antitoxin
Download Length: 76 a.a. Molecular weight: 8482.58 Da Isoelectric Point: 4.0385
>AT178680 WP_212717673.1 NZ_CP063659:c1938180-1937953 [Synechocystis sp. PCC 7339]
MNTAQISTDGTHQIIILPENFTIAGSEVYIKKIGSTIILIAKDNPWQSLIESLDQFSDDFMATREQPPLDVREEF
MNTAQISTDGTHQIIILPENFTIAGSEVYIKKIGSTIILIAKDNPWQSLIESLDQFSDDFMATREQPPLDVREEF
Download Length: 228 bp
>AT178680 NZ_CP063659:c1938180-1937953 [Synechocystis sp. PCC 7339]
ATGAACACCGCTCAAATTAGCACTGATGGCACCCATCAAATCATAATCTTACCAGAAAATTTTACAATAGCCGGAAGCGA
GGTTTACATTAAAAAAATTGGAAGTACGATTATTTTGATTGCCAAAGATAACCCTTGGCAATCCTTAATTGAAAGCTTAG
ATCAATTTTCAGATGACTTTATGGCAACTAGGGAACAACCACCCCTTGATGTGCGAGAAGAATTCTAA
ATGAACACCGCTCAAATTAGCACTGATGGCACCCATCAAATCATAATCTTACCAGAAAATTTTACAATAGCCGGAAGCGA
GGTTTACATTAAAAAAATTGGAAGTACGATTATTTTGATTGCCAAAGATAACCCTTGGCAATCCTTAATTGAAAGCTTAG
ATCAATTTTCAGATGACTTTATGGCAACTAGGGAACAACCACCCCTTGATGTGCGAGAAGAATTCTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|