Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3128195..3128466 | Replicon | chromosome |
| Accession | NZ_CP063511 | ||
| Organism | Escherichia coli strain EH08-18-36 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3128325..3128428 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3128195..3128466 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IQS18_RS15145 | 3124750..3125412 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| IQS18_RS15150 | 3125436..3126092 | - | 657 | WP_001752600.1 | carbon-nitrogen hydrolase family protein | - |
| IQS18_RS15155 | 3126194..3126424 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IQS18_RS15160 | 3126563..3126937 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| IQS18_RS15165 | 3126941..3127813 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| IQS18_RS15170 | 3127826..3128167 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3128195..3128466 | - | 272 | - | - | Antitoxin |
| - | 3128325..3128428 | + | 104 | - | - | Toxin |
| IQS18_RS15175 | 3128563..3129219 | + | 657 | WP_001752599.1 | protein-serine/threonine phosphatase | - |
| IQS18_RS15180 | 3129220..3129411 | - | 192 | WP_001338167.1 | YebW family protein | - |
| IQS18_RS15185 | 3129516..3129752 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| IQS18_RS15190 | 3129870..3131309 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T178585 NZ_CP063511:3128325-3128428 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT178585 NZ_CP063511:c3128466-3128195 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
