Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2870188..2870459 | Replicon | chromosome |
| Accession | NZ_CP063503 | ||
| Organism | Escherichia coli strain EH09-18-41 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2870226..2870329 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2870188..2870459 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IQS19_RS13875 | 2867345..2868784 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IQS19_RS13880 | 2868902..2869138 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IQS19_RS13885 | 2869243..2869434 | + | 192 | WP_000457842.1 | YebW family protein | - |
| IQS19_RS13890 | 2869435..2870091 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2870188..2870459 | + | 272 | - | - | Antitoxin |
| - | 2870226..2870329 | - | 104 | - | - | Toxin |
| IQS19_RS13895 | 2870487..2870828 | - | 342 | WP_000976476.1 | YebY family protein | - |
| IQS19_RS13900 | 2870841..2871713 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| IQS19_RS13905 | 2871717..2872091 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| IQS19_RS13910 | 2872230..2872460 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IQS19_RS13915 | 2872562..2873218 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| IQS19_RS13920 | 2873242..2873904 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T178543 NZ_CP063503:c2870329-2870226 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT178543 NZ_CP063503:2870188-2870459 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
