Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 769807..770078 | Replicon | chromosome |
| Accession | NZ_CP063499 | ||
| Organism | Escherichia coli strain EH10-18-47 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 769937..770040 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 769807..770078 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IQS20_RS03615 | 766363..767025 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IQS20_RS03620 | 767049..767705 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| IQS20_RS03625 | 767807..768037 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IQS20_RS03630 | 768176..768550 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| IQS20_RS03635 | 768554..769426 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| IQS20_RS03640 | 769439..769780 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 769807..770078 | - | 272 | - | - | Antitoxin |
| - | 769937..770040 | + | 104 | - | - | Toxin |
| IQS20_RS03645 | 770175..770831 | + | 657 | WP_096282503.1 | protein-serine/threonine phosphatase | - |
| IQS20_RS03650 | 770832..771023 | - | 192 | WP_001296140.1 | YebW family protein | - |
| IQS20_RS03655 | 771128..771364 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IQS20_RS03660 | 771482..772921 | - | 1440 | WP_203161029.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T178514 NZ_CP063499:769937-770040 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT178514 NZ_CP063499:c770078-769807 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
