Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3575224..3575495 | Replicon | chromosome |
| Accession | NZ_CP063492 | ||
| Organism | Escherichia coli strain EF5-18-41 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3575262..3575365 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3575224..3575495 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IQS14_RS17365 | 3572381..3573820 | + | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IQS14_RS17370 | 3573938..3574174 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IQS14_RS17375 | 3574279..3574470 | + | 192 | WP_001296140.1 | YebW family protein | - |
| IQS14_RS17380 | 3574471..3575127 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 3575224..3575495 | + | 272 | - | - | Antitoxin |
| - | 3575262..3575365 | - | 104 | - | - | Toxin |
| IQS14_RS17385 | 3575523..3575864 | - | 342 | WP_000976481.1 | YebY family protein | - |
| IQS14_RS17390 | 3575877..3576749 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| IQS14_RS17395 | 3576753..3577127 | - | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| IQS14_RS17400 | 3577266..3577496 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IQS14_RS17405 | 3577598..3578254 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| IQS14_RS17410 | 3578278..3578940 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3559385..3584668 | 25283 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T178489 NZ_CP063492:c3575365-3575262 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT178489 NZ_CP063492:3575224-3575495 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
