Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3789888..3790159 | Replicon | chromosome |
| Accession | NZ_CP063487 | ||
| Organism | Escherichia coli strain EF7-18-51 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3790018..3790121 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3789888..3790159 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IQS15_RS18105 | 3786443..3787105 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| IQS15_RS18110 | 3787129..3787785 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| IQS15_RS18115 | 3787887..3788117 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IQS15_RS18120 | 3788256..3788630 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| IQS15_RS18125 | 3788634..3789506 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| IQS15_RS18130 | 3789519..3789860 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3789888..3790159 | - | 272 | - | - | Antitoxin |
| - | 3790018..3790121 | + | 104 | - | - | Toxin |
| IQS15_RS18135 | 3790256..3790912 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| IQS15_RS18140 | 3790913..3791104 | - | 192 | WP_001338167.1 | YebW family protein | - |
| IQS15_RS18145 | 3791209..3791445 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| IQS15_RS18150 | 3791563..3793002 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T178452 NZ_CP063487:3790018-3790121 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT178452 NZ_CP063487:c3790159-3789888 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
