Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 844213..844484 | Replicon | chromosome |
| Accession | NZ_CP063476 | ||
| Organism | Escherichia coli strain EM10-18-28 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 844343..844446 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 844213..844484 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IQS23_RS04070 | 840768..841430 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IQS23_RS04075 | 841454..842110 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| IQS23_RS04080 | 842212..842442 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IQS23_RS04085 | 842581..842955 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| IQS23_RS04090 | 842959..843831 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| IQS23_RS04095 | 843844..844185 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 844213..844484 | - | 272 | - | - | Antitoxin |
| - | 844343..844446 | + | 104 | - | - | Toxin |
| IQS23_RS04100 | 844581..845237 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| IQS23_RS04105 | 845238..845429 | - | 192 | WP_001296140.1 | YebW family protein | - |
| IQS23_RS04110 | 845534..845770 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IQS23_RS04115 | 845888..847327 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T178354 NZ_CP063476:844343-844446 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT178354 NZ_CP063476:c844484-844213 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
