Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3195187..3195458 Replicon chromosome
Accession NZ_CP063459
Organism Escherichia coli strain EM22-18-53

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3195317..3195420 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3195187..3195458 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IQS26_RS15230 3191742..3192404 - 663 WP_000944256.1 exodeoxyribonuclease X -
IQS26_RS15235 3192428..3193084 - 657 WP_000011658.1 carbon-nitrogen hydrolase family protein -
IQS26_RS15240 3193186..3193416 - 231 WP_000916763.1 DNA polymerase III subunit theta -
IQS26_RS15245 3193555..3193929 + 375 WP_000204699.1 CopC domain-containing protein YobA -
IQS26_RS15250 3193933..3194805 + 873 WP_000879280.1 copper homeostasis membrane protein CopD -
IQS26_RS15255 3194818..3195159 + 342 WP_000976492.1 YebY family protein -
- 3195187..3195458 - 272 - - Antitoxin
- 3195317..3195420 + 104 - - Toxin
IQS26_RS15260 3195555..3196211 + 657 WP_000812724.1 protein-serine/threonine phosphatase -
IQS26_RS15265 3196212..3196403 - 192 WP_001296140.1 YebW family protein -
IQS26_RS15270 3196508..3196744 - 237 WP_001295499.1 DUF1480 family protein -
IQS26_RS15275 3196862..3198301 - 1440 WP_000057023.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T178284 NZ_CP063459:3195317-3195420 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT178284 NZ_CP063459:c3195458-3195187 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References