Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1768989..1769133 | Replicon | chromosome |
| Accession | NZ_CP063441 | ||
| Organism | Enterobacter asburiae strain SD4L | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1769024..1769127 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1768989..1769133 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| INS04_RS08185 | 1765472..1766134 | - | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
| INS04_RS08190 | 1766159..1766809 | - | 651 | WP_193806493.1 | carbon-nitrogen hydrolase family protein | - |
| INS04_RS08195 | 1766920..1767150 | - | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| INS04_RS08200 | 1767288..1767659 | + | 372 | WP_193806495.1 | CopC domain-containing protein YobA | - |
| INS04_RS08205 | 1767661..1768530 | + | 870 | WP_193806496.1 | copper homeostasis membrane protein CopD | - |
| INS04_RS08210 | 1768547..1768885 | + | 339 | WP_039263646.1 | YebY family protein | - |
| - | 1768989..1769133 | - | 145 | - | - | Antitoxin |
| - | 1769024..1769127 | + | 104 | - | - | Toxin |
| INS04_RS08215 | 1769326..1770222 | - | 897 | WP_126330129.1 | benzoate transporter | - |
| INS04_RS08220 | 1770398..1771339 | - | 942 | WP_193806498.1 | VirK/YbjX family protein | - |
| INS04_RS08225 | 1771506..1772150 | + | 645 | WP_193806500.1 | protein-serine/threonine phosphatase | - |
| INS04_RS08230 | 1772185..1772424 | - | 240 | WP_008500472.1 | YebV family protein | - |
| INS04_RS08235 | 1772531..1773973 | - | 1443 | WP_193806502.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T178240 NZ_CP063441:1769024-1769127 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT178240 NZ_CP063441:c1769133-1768989 [Enterobacter asburiae]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGGCGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGGCGCCAGGTTTTCCAGT
