Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2869323..2869489 | Replicon | chromosome |
| Accession | NZ_CP063425 | ||
| Organism | Kosakonia pseudosacchari strain BDA62-3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2869327..2869429 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2869323..2869489 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IP581_RS13470 | 2865728..2865967 | + | 240 | WP_017456958.1 | DUF1480 family protein | - |
| IP581_RS13475 | 2866073..2866264 | + | 192 | WP_097399576.1 | YebW family protein | - |
| IP581_RS13480 | 2866265..2866909 | - | 645 | WP_193822699.1 | protein-serine/threonine phosphatase | - |
| IP581_RS13485 | 2867085..2868032 | + | 948 | WP_193820609.1 | VirK/YbjX family protein | - |
| - | 2869323..2869489 | + | 167 | - | - | Antitoxin |
| - | 2869327..2869429 | - | 103 | - | - | Toxin |
| IP581_RS13490 | 2869587..2869925 | - | 339 | WP_193820610.1 | YebY family protein | - |
| IP581_RS13495 | 2869944..2870813 | - | 870 | WP_193820611.1 | copper homeostasis membrane protein CopD | - |
| IP581_RS13500 | 2870817..2871191 | - | 375 | WP_193820612.1 | CopC domain-containing protein YobA | - |
| IP581_RS13505 | 2871329..2871559 | + | 231 | WP_017456949.1 | DNA polymerase III subunit theta | - |
| IP581_RS13510 | 2871571..2872233 | + | 663 | WP_193820613.1 | exodeoxyribonuclease X | - |
| IP581_RS13515 | 2872215..2874290 | - | 2076 | WP_193820614.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T178204 NZ_CP063425:c2869429-2869327 [Kosakonia pseudosacchari]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTTTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 167 bp
>AT178204 NZ_CP063425:2869323-2869489 [Kosakonia pseudosacchari]
AGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGGCGTCAGGTTTTCCAGTCCGCGACAAAAGTGGTC
AGAAAAA
AGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGGCGTCAGGTTTTCCAGTCCGCGACAAAAGTGGTC
AGAAAAA
