Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1908670..1908814 | Replicon | chromosome |
| Accession | NZ_CP063403 | ||
| Organism | Klebsiella variicola strain 8917 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1908706..1908808 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1908670..1908814 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AMN10_RS09390 | 1903800..1905860 | + | 2061 | WP_032738870.1 | oligopeptidase B | - |
| AMN10_RS09395 | 1905864..1906523 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| AMN10_RS09400 | 1906602..1906832 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| AMN10_RS09405 | 1906946..1907320 | + | 375 | WP_012541261.1 | CopC domain-containing protein YobA | - |
| AMN10_RS09410 | 1907324..1908193 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| AMN10_RS09415 | 1908210..1908548 | + | 339 | WP_049162420.1 | YebY family protein | - |
| - | 1908670..1908814 | - | 145 | - | - | Antitoxin |
| - | 1908706..1908808 | + | 103 | - | - | Toxin |
| AMN10_RS09420 | 1909193..1909336 | - | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| AMN10_RS09425 | 1909440..1910408 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| AMN10_RS09430 | 1910564..1911217 | + | 654 | WP_022066249.1 | protein-serine/threonine phosphatase | - |
| AMN10_RS09435 | 1911216..1911404 | - | 189 | Protein_1848 | YebW family protein | - |
| AMN10_RS09440 | 1911502..1911741 | - | 240 | WP_002911393.1 | YebV family protein | - |
| AMN10_RS09445 | 1911857..1913290 | - | 1434 | WP_072045398.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T178163 NZ_CP063403:1908706-1908808 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT178163 NZ_CP063403:c1908814-1908670 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
