Detailed information of TA system TA178132

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-VagC
• Location: 5337398..5338038
• Replicon: chromosome
• Accession: NZ_CP063394
• Organism: Pseudomonas aeruginosa strain ST167_d67burn1

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: -
• Locus tag: IPV40_RS24720
• Protein ID: WP_003134109.1
• Coordinates: 5337398..5337808 (-)
• Length: 137 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: -
• Locus tag: IPV40_RS24725
• Protein ID: WP_031634724.1
• Coordinates: 5337808..5338038 (-)
• Length: 77 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
IPV40_RS24680	5332924..5333721	+	798	WP_235597565.1	hypothetical protein	-
IPV40_RS24685 (IPV40_24685)	5333878..5334606	+	729	WP_004352842.1	TIGR03761 family integrating conjugative element protein	-
IPV40_RS24690 (IPV40_24690)	5334612..5335160	+	549	WP_004352841.1	DUF3158 family protein	-
IPV40_RS24695 (IPV40_24695)	5335207..5336046	+	840	WP_003105750.1	Rha family transcriptional regulator	-
IPV40_RS24700 (IPV40_24700)	5336076..5336564	+	489	WP_004352840.1	single-stranded DNA-binding protein	-
IPV40_RS24705 (IPV40_24705)	5336720..5336887	+	168	WP_128729268.1	CrpP family ICE-associated protein	-
IPV40_RS24710 (IPV40_24710)	5336953..5337171	-	219	WP_023083218.1	hypothetical protein	-
IPV40_RS24715 (IPV40_24715)	5337185..5337382	-	198	WP_023083219.1	hypothetical protein	-
IPV40_RS24720 (IPV40_24720)	5337398..5337808	-	411	WP_003134109.1	tRNA(fMet)-specific endonuclease VapC	Toxin
IPV40_RS24725 (IPV40_24725)	5337808..5338038	-	231	WP_031634724.1	type II toxin-antitoxin system VapB family antitoxin	Antitoxin
IPV40_RS24730 (IPV40_24730)	5338294..5340213	+	1920	WP_004352838.1	type I DNA topoisomerase	-
IPV40_RS24735 (IPV40_24735)	5340521..5340730	+	210	WP_003105733.1	cold-shock protein	-
IPV40_RS24740 (IPV40_24740)	5340951..5342840	+	1890	WP_003105732.1	hypothetical protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Integrative and Conjugative Element	-	-	5318685..5407885	89200

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (5-124)

Antitoxin

• SpoVT-AbrB domain (7-33)

Sequences

Toxin

Protein

• Length: 137 a.a.
• Molecular weight: 15452.78 Da
• Isoelectric Point: 7.3233

>T178132 WP_003134109.1 NZ_CP063394:c5337808-5337398 [Pseudomonas aeruginosa]
MLKFMLDTNICIFTIKNRPQEVREAFLRHHDQMCISTVTLMELIYGAEKSSNPSRNLADVEGFAARLEVLKYDQEAAAHT
GQLRAELARLGKQIGPYDQMIAGHARSQGLIVVTNNRREFDRVPGLRVEDWVTPIV

Nucleotide

• Length: 411 bp

>T178132 NZ_CP083862:3895899-3896222 [Enterobacter kobei]
ATGCAAATTTCATCTGTACCGGCCACGGTGCCGGTTTCGTCACGCCTGTCGCCCGTAATGGTGTGGCAGCAGTTGTTAAC
GTATCTGCTGGAGCACCACTACGGCCTCACACTCAACGACACACCATTTCATGACGACACGGCCATTGAGGAGCATATCG
ATGCGGGGATAACGCTTGCCGATGCTGTTAATTTCCTGGTCGAAAAGTACGAACTGGCTCGTATCGACCGCAAGGGATTT
ACATGGCGAGAGCAACCCCCCTTCATTACTGCAACGGATATTCTGCGTGCCAAAAAGAACATCGGGCTGTTGCCCAGATC
TTAA

Antitoxin

Protein

• Length: 77 a.a.
• Molecular weight: 8420.29 Da
• Isoelectric Point: 4.2821

>AT178132 WP_031634724.1 NZ_CP063394:c5338038-5337808 [Pseudomonas aeruginosa]
VEQGSVFQSNRSQAVRLPKAVALPDDVKRVDVVAVGRARIITPAGESWDSWFDGEGVTADFMAEREQPADQERETF

Nucleotide

• Length: 231 bp

>AT178132 NZ_CP083862:3895544-3895867 [Enterobacter kobei]
ATGCAAAATTCATGGGGACTGAAGCGCGACATCTCGCCGTGCTTCGGTGCAAGGCTTGTGCAGGAAGGCTGTCGCCTGCA
TTTTCTGGCGGACCGTGCAGGTATTAGTGGTACGTTTAACGAGGAGGAGGCACTGCGTCTGGATCAGGCATTTCCGCTAG
TGATGAAACAGCTTGAATTGATGCTGACAACCGGTGAACTAAATCCGCGCCATCAGCATTGCGTCACGTTGTATCATAAC
GGACTAACTTGTGAAGCTGACACTCTCGGCTCTCATGGCTATGTTTACATCGTTATTTATCCTCAGGCATTTGCAACCAG
GTAA