Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/ParE-YafN |
Location | 4307644..4308169 | Replicon | chromosome |
Accession | NZ_CP063380 | ||
Organism | Pectobacterium versatile strain ECC15 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | IMY97_RS19615 | Protein ID | WP_039539560.1 |
Coordinates | 4307885..4308169 (+) | Length | 95 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | C6D956 |
Locus tag | IMY97_RS19610 | Protein ID | WP_005973616.1 |
Coordinates | 4307644..4307895 (+) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
IMY97_RS19565 (IMY97_19740) | 4303447..4303782 | + | 336 | WP_039355545.1 | outer membrane protein assembly factor BamE | - |
IMY97_RS19570 (IMY97_19745) | 4304021..4304311 | - | 291 | WP_039470935.1 | RnfH family protein | - |
IMY97_RS19575 (IMY97_19750) | 4304292..4304738 | - | 447 | WP_010282427.1 | type II toxin-antitoxin system RatA family toxin | - |
IMY97_RS19580 (IMY97_19755) | 4304894..4305376 | + | 483 | WP_010282425.1 | SsrA-binding protein SmpB | - |
IMY97_RS19590 (IMY97_19765) | 4306050..4306379 | - | 330 | WP_223193302.1 | DUF1493 family protein | - |
IMY97_RS19595 (IMY97_19770) | 4306379..4306850 | - | 472 | Protein_3846 | hypothetical protein | - |
IMY97_RS19600 (IMY97_19775) | 4306980..4307231 | + | 252 | WP_105879157.1 | prevent-host-death protein | - |
IMY97_RS19605 (IMY97_23390) | 4307221..4307472 | + | 252 | WP_223193489.1 | hypothetical protein | - |
IMY97_RS19610 (IMY97_19785) | 4307644..4307895 | + | 252 | WP_005973616.1 | prevent-host-death protein | Antitoxin |
IMY97_RS19615 (IMY97_19790) | 4307885..4308169 | + | 285 | WP_039539560.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
IMY97_RS19620 (IMY97_19795) | 4308435..4308611 | + | 177 | WP_158256803.1 | hypothetical protein | - |
IMY97_RS19625 (IMY97_19800) | 4308828..4309406 | + | 579 | WP_107332342.1 | hypothetical protein | - |
IMY97_RS19630 (IMY97_19805) | 4309775..4310555 | + | 781 | Protein_3853 | transporter substrate-binding domain-containing protein | - |
IMY97_RS19635 (IMY97_19810) | 4310811..4311437 | + | 627 | WP_103861356.1 | LysE family transporter | - |
IMY97_RS19640 (IMY97_19815) | 4311483..4311965 | - | 483 | WP_029367525.1 | GNAT family N-acetyltransferase | - |
IMY97_RS19645 (IMY97_19820) | 4312215..4312640 | - | 426 | WP_105879155.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 95 a.a. Molecular weight: 11034.00 Da Isoelectric Point: 10.1716
>T178071 WP_039539560.1 NZ_CP063380:4307885-4308169 [Pectobacterium versatile]
MSYKLEFEEHALKEFKKLGAPVREQFTKKLKEVLQHPHVPANRLHGMADCYKIKLRSAGYRLVYQVLEHEIVVLVLAVGK
RERSEVYKTAKDRL
MSYKLEFEEHALKEFKKLGAPVREQFTKKLKEVLQHPHVPANRLHGMADCYKIKLRSAGYRLVYQVLEHEIVVLVLAVGK
RERSEVYKTAKDRL
Download Length: 285 bp
>T178071 NZ_CP083834:c2832691-2832588 [Enterobacter asburiae]
GGCAAGGCTACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCTACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 84 a.a. Molecular weight: 9079.35 Da Isoelectric Point: 5.0807
>AT178071 WP_005973616.1 NZ_CP063380:4307644-4307895 [Pectobacterium versatile]
MSVQPILANAAVSISDFKKSPNAALKEANGEPVAVLTNGRISGYYVSPETWEALADYQEDIELAKIARSRMKGKRVKVDL
DEL
MSVQPILANAAVSISDFKKSPNAALKEANGEPVAVLTNGRISGYYVSPETWEALADYQEDIELAKIARSRMKGKRVKVDL
DEL
Download Length: 252 bp
>AT178071 NZ_CP083834:2832582-2832726 [Enterobacter asburiae]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTAGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTAGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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