Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-YafN |
| Location | 4306980..4307472 | Replicon | chromosome |
| Accession | NZ_CP063380 | ||
| Organism | Pectobacterium versatile strain ECC15 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | IMY97_RS19605 | Protein ID | WP_223193489.1 |
| Coordinates | 4307221..4307472 (+) | Length | 84 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | IMY97_RS19600 | Protein ID | WP_105879157.1 |
| Coordinates | 4306980..4307231 (+) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMY97_RS19565 (IMY97_19740) | 4303447..4303782 | + | 336 | WP_039355545.1 | outer membrane protein assembly factor BamE | - |
| IMY97_RS19570 (IMY97_19745) | 4304021..4304311 | - | 291 | WP_039470935.1 | RnfH family protein | - |
| IMY97_RS19575 (IMY97_19750) | 4304292..4304738 | - | 447 | WP_010282427.1 | type II toxin-antitoxin system RatA family toxin | - |
| IMY97_RS19580 (IMY97_19755) | 4304894..4305376 | + | 483 | WP_010282425.1 | SsrA-binding protein SmpB | - |
| IMY97_RS19590 (IMY97_19765) | 4306050..4306379 | - | 330 | WP_223193302.1 | DUF1493 family protein | - |
| IMY97_RS19595 (IMY97_19770) | 4306379..4306850 | - | 472 | Protein_3846 | hypothetical protein | - |
| IMY97_RS19600 (IMY97_19775) | 4306980..4307231 | + | 252 | WP_105879157.1 | prevent-host-death protein | Antitoxin |
| IMY97_RS19605 (IMY97_23390) | 4307221..4307472 | + | 252 | WP_223193489.1 | hypothetical protein | Toxin |
| IMY97_RS19610 (IMY97_19785) | 4307644..4307895 | + | 252 | WP_005973616.1 | prevent-host-death protein | - |
| IMY97_RS19615 (IMY97_19790) | 4307885..4308169 | + | 285 | WP_039539560.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| IMY97_RS19620 (IMY97_19795) | 4308435..4308611 | + | 177 | WP_158256803.1 | hypothetical protein | - |
| IMY97_RS19625 (IMY97_19800) | 4308828..4309406 | + | 579 | WP_107332342.1 | hypothetical protein | - |
| IMY97_RS19630 (IMY97_19805) | 4309775..4310555 | + | 781 | Protein_3853 | transporter substrate-binding domain-containing protein | - |
| IMY97_RS19635 (IMY97_19810) | 4310811..4311437 | + | 627 | WP_103861356.1 | LysE family transporter | - |
| IMY97_RS19640 (IMY97_19815) | 4311483..4311965 | - | 483 | WP_029367525.1 | GNAT family N-acetyltransferase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 84 a.a. Molecular weight: 10011.62 Da Isoelectric Point: 10.0265
>T178070 WP_223193489.1 NZ_CP063380:4307221-4307472 [Pectobacterium versatile]
MSYKLEFEEHALKEFKKLRAPMWEQFTKKLKEILQNPHVPANRLHGMADCYKKFIKQPKTDYKRGQFSTRGYFVVQPIYQ
GDE
MSYKLEFEEHALKEFKKLRAPMWEQFTKKLKEILQNPHVPANRLHGMADCYKKFIKQPKTDYKRGQFSTRGYFVVQPIYQ
GDE
Download Length: 252 bp
>T178070 NZ_CP083834:1631234-1631734 [Enterobacter asburiae]
ATGTTATCAGAGGGAACCGATTATGACTTCGAGGATTTTGATTGTGGCGAACCCTCGCTAAATGCCTTCCTTGCTGAACA
TCTGGTGCGTCAGCACAATGGGCGTATTTTACGAGCCTACCTGCTTAAAGAGCGCGATCGTCCGCGTGTCCTGGGTTATT
ACACGTTATCGGGAAGCTGTTTTGAAAGAGCGATGCTTCCTTCTAAGACTCAGCAGCGCCGAATCCCTTATATCAACGTA
CCCAGCGTGACGCTGGGACGTCTGGCTGTAGATAAAACACTACAGGGAAACGAGTGGGGAACAACGCTCGTCGCGCATGC
TATGCGCGTTGTCTACCTGGCTTCCCAGGCTGTGGGGGTACACGGAATATTTGTTGATGCCCTTAACGAGCGGGCAAAAC
GATTTTATCTGAAGCAGGGCTTTATCCCGCTGACAGCTGAAAACAGCCATTCTTTGTTCTTCCCTACAAAATCTATCGAA
CGGCTGTTTGAGCAAGAGTGA
ATGTTATCAGAGGGAACCGATTATGACTTCGAGGATTTTGATTGTGGCGAACCCTCGCTAAATGCCTTCCTTGCTGAACA
TCTGGTGCGTCAGCACAATGGGCGTATTTTACGAGCCTACCTGCTTAAAGAGCGCGATCGTCCGCGTGTCCTGGGTTATT
ACACGTTATCGGGAAGCTGTTTTGAAAGAGCGATGCTTCCTTCTAAGACTCAGCAGCGCCGAATCCCTTATATCAACGTA
CCCAGCGTGACGCTGGGACGTCTGGCTGTAGATAAAACACTACAGGGAAACGAGTGGGGAACAACGCTCGTCGCGCATGC
TATGCGCGTTGTCTACCTGGCTTCCCAGGCTGTGGGGGTACACGGAATATTTGTTGATGCCCTTAACGAGCGGGCAAAAC
GATTTTATCTGAAGCAGGGCTTTATCCCGCTGACAGCTGAAAACAGCCATTCTTTGTTCTTCCCTACAAAATCTATCGAA
CGGCTGTTTGAGCAAGAGTGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9111.41 Da Isoelectric Point: 5.0807
>AT178070 WP_105879157.1 NZ_CP063380:4306980-4307231 [Pectobacterium versatile]
MSVQPILANAAVSISDFKKSPNAALKEANGEPVAMLTNGRISGYYVSPETWEALADYQEDIELAKIARSRMKGKRVKVDL
DEL
MSVQPILANAAVSISDFKKSPNAALKEANGEPVAMLTNGRISGYYVSPETWEALADYQEDIELAKIARSRMKGKRVKVDL
DEL
Download Length: 252 bp
>AT178070 NZ_CP083834:1630937-1631206 [Enterobacter asburiae]
ATGCCAGCACTTAAAAAACAGCGTATCGATCTTCGCTTAACGGACGAAGACAAAACAATTATTGAAGAAGCGGCTGCGAT
GACGAACCAAACGATCACCCAGTTTATGGTGAACAGTGCGTCAGAGCGTGCTGCAGAGGTCATTGAGCAGCACCGTCGTC
TCGTATTAAACGAAGCATCATGGAATGCGGTGATGGATGCCATCGACAATCCGCCTGAGCCAAATGAACGCCTGAAACGA
GCAGCAAAACGGCTTCGAAACATGGAGTGA
ATGCCAGCACTTAAAAAACAGCGTATCGATCTTCGCTTAACGGACGAAGACAAAACAATTATTGAAGAAGCGGCTGCGAT
GACGAACCAAACGATCACCCAGTTTATGGTGAACAGTGCGTCAGAGCGTGCTGCAGAGGTCATTGAGCAGCACCGTCGTC
TCGTATTAAACGAAGCATCATGGAATGCGGTGATGGATGCCATCGACAATCCGCCTGAGCCAAATGAACGCCTGAAACGA
GCAGCAAAACGGCTTCGAAACATGGAGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|