Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3299526..3299666 | Replicon | chromosome |
| Accession | NZ_CP063354 | ||
| Organism | Serratia marcescens strain SCQ1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3299570..3299666 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3299526..3299666 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA266_RS15610 | 3294794..3295189 | + | 396 | WP_048322942.1 | RidA family protein | - |
| CA266_RS15615 | 3295346..3296299 | + | 954 | WP_004928848.1 | prolyl aminopeptidase | - |
| CA266_RS15620 | 3296331..3296561 | - | 231 | WP_016928156.1 | DNA polymerase III subunit theta | - |
| CA266_RS15625 | 3296906..3297424 | + | 519 | WP_015377481.1 | non-heme ferritin | - |
| CA266_RS15630 | 3297717..3298133 | + | 417 | WP_046686875.1 | CopC domain-containing protein YobA | - |
| CA266_RS15635 | 3298136..3299017 | + | 882 | WP_193842708.1 | copper homeostasis membrane protein CopD | - |
| CA266_RS15640 | 3299087..3299428 | + | 342 | WP_004940890.1 | YebY family protein | - |
| - | 3299526..3299666 | - | 141 | - | - | Antitoxin |
| - | 3299570..3299666 | + | 97 | - | - | Toxin |
| CA266_RS15645 | 3299745..3300714 | - | 970 | Protein_3025 | tyrosine-type recombinase/integrase | - |
| CA266_RS15650 | 3300753..3301151 | + | 399 | WP_193842709.1 | tail fiber assembly protein | - |
| CA266_RS15655 | 3301177..3301542 | - | 366 | WP_072056115.1 | helix-turn-helix transcriptional regulator | - |
| CA266_RS15660 | 3301646..3302452 | - | 807 | WP_072056116.1 | helix-turn-helix transcriptional regulator | - |
| CA266_RS15665 | 3302648..3303112 | - | 465 | WP_193842710.1 | VOC family protein | - |
| CA266_RS15670 | 3303128..3303928 | - | 801 | WP_072056118.1 | NAD(P)H-dependent oxidoreductase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T177999 NZ_CP063354:3299570-3299666 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT177999 NZ_CP063354:c3299666-3299526 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
