Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2992228..2992321 Replicon chromosome
Accession NZ_CP063303
Organism Yersinia pestis strain 14D

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2992229..2992321 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2992228..2992321 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IM067_RS13125 (IM067_13105) 2987421..2989499 - 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -
IM067_RS13130 (IM067_13110) 2989499..2990659 - 1161 WP_002211099.1 flagellar biosynthesis protein FlhB -
IM067_RS13135 (IM067_13115) 2991191..2991649 + 459 WP_002211098.1 hypothetical protein -
IM067_RS13140 (IM067_13120) 2991643..2991969 + 327 WP_002211097.1 DUF1493 family protein -
- 2992228..2992321 + 94 - - Antitoxin
- 2992229..2992321 - 93 - - Toxin
IM067_RS13145 (IM067_13125) 2992491..2992832 - 342 WP_002211095.1 YebY family protein -
IM067_RS13150 (IM067_13130) 2992929..2993813 - 885 WP_002211094.1 copper homeostasis membrane protein CopD -
IM067_RS13155 (IM067_13135) 2993816..2994202 - 387 WP_002211093.1 CopC domain-containing protein YobA -
IM067_RS13160 (IM067_13140) 2994599..2995108 - 510 WP_002211092.1 non-heme ferritin -
IM067_RS13165 (IM067_13145) 2995509..2995739 + 231 WP_002211091.1 DNA polymerase III subunit theta -
IM067_RS13170 (IM067_13150) 2995799..2996749 - 951 WP_002211090.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 93 bp

>T177884 NZ_CP063303:c2992321-2992229 [Yersinia pestis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTT

Antitoxin


Download         Length: 94 bp

>AT177884 NZ_CP063303:2992228-2992321 [Yersinia pestis]
TAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGTA
TTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References