Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2366952..2367120 | Replicon | chromosome |
| Accession | NZ_CP063301 | ||
| Organism | Klebsiella grimontii strain M5a1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2367010..2367113 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2366952..2367120 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| INR80_RS11185 | 2362079..2364139 | + | 2061 | WP_004134815.1 | oligopeptidase B | - |
| INR80_RS11190 | 2364146..2364805 | - | 660 | WP_004134816.1 | exodeoxyribonuclease X | - |
| INR80_RS11195 | 2364884..2365114 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| INR80_RS11200 | 2365250..2365624 | + | 375 | WP_004134817.1 | CopC domain-containing protein YobA | - |
| INR80_RS11205 | 2365629..2366498 | + | 870 | WP_004134819.1 | copper homeostasis membrane protein CopD | - |
| INR80_RS11210 | 2366515..2366853 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2366952..2367120 | - | 169 | - | - | Antitoxin |
| - | 2367010..2367113 | + | 104 | - | - | Toxin |
| INR80_RS11215 | 2367238..2368197 | - | 960 | WP_004134821.1 | spore coat U domain-containing protein | - |
| INR80_RS11220 | 2368212..2370542 | - | 2331 | WP_049089570.1 | fimbrial biogenesis outer membrane usher protein | - |
| INR80_RS11225 | 2370545..2371309 | - | 765 | WP_004134823.1 | molecular chaperone | - |
| INR80_RS11230 | 2371328..2371846 | - | 519 | WP_049099811.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T177869 NZ_CP063301:2367010-2367113 [Klebsiella grimontii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT177869 NZ_CP063301:c2367120-2366952 [Klebsiella grimontii]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
