Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2228196..2228341 | Replicon | chromosome |
| Accession | NZ_CP063277 | ||
| Organism | Klebsiella pneumoniae strain MAR14-456 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2228232..2228334 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2228196..2228341 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IL253_RS10715 | 2223326..2225386 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| IL253_RS10720 | 2225390..2226049 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| IL253_RS10725 | 2226128..2226358 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| IL253_RS10730 | 2226471..2226845 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| IL253_RS10735 | 2226849..2227718 | + | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| IL253_RS10740 | 2227735..2228073 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2228196..2228341 | - | 146 | - | - | Antitoxin |
| - | 2228232..2228334 | + | 103 | - | - | Toxin |
| IL253_RS10745 | 2228709..2228852 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| IL253_RS10750 | 2228957..2229925 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| IL253_RS10755 | 2230082..2230735 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| IL253_RS10760 | 2230732..2230923 | - | 192 | WP_002911395.1 | YebW family protein | - |
| IL253_RS10765 | 2231021..2231260 | - | 240 | WP_002911393.1 | YebV family protein | - |
| IL253_RS10770 | 2231376..2232809 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T177848 NZ_CP063277:2228232-2228334 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT177848 NZ_CP063277:c2228341-2228196 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
