177818

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 460340..460867 Replicon chromosome
Accession NZ_CP063241
Organism Pectobacterium brasiliense strain ZLMLSHJ5

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag IHJ54_RS02010 Protein ID WP_203449885.1
Coordinates 460592..460867 (+) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag IHJ54_RS02005 Protein ID WP_203449884.1
Coordinates 460340..460588 (+) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IHJ54_RS01980 455625..456170 + 546 WP_038478705.1 PLD-like domain protein -
IHJ54_RS01985 456170..458341 + 2172 WP_203449881.1 hypothetical protein -
IHJ54_RS01990 458377..458739 - 363 WP_203449882.1 6-carboxytetrahydropterin synthase QueD -
IHJ54_RS01995 459000..459377 - 378 Protein_383 hypothetical protein -
IHJ54_RS02000 459975..460124 - 150 WP_203449883.1 hypothetical protein -
IHJ54_RS02005 460340..460588 + 249 WP_203449884.1 ribbon-helix-helix domain-containing protein Antitoxin
IHJ54_RS02010 460592..460867 + 276 WP_203449885.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
IHJ54_RS02015 460915..461427 + 513 WP_203449886.1 AAA family ATPase -
IHJ54_RS02020 461744..462226 - 483 WP_203449887.1 hypothetical protein -
IHJ54_RS02025 462237..462941 - 705 WP_014913963.1 hypothetical protein -
IHJ54_RS02030 462964..464499 - 1536 WP_080724583.1 SUMF1/EgtB/PvdO family nonheme iron enzyme -
IHJ54_RS02035 464489..465721 - 1233 WP_203449888.1 FtsX-like permease family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-90)

Antitoxin

Ribbon-helix-helix protein, CopG

(9-43)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 11075.36 Da        Isoelectric Point: 4.8888

>T177818 WP_203449885.1 NZ_CP063241:460592-460867 [Pectobacterium brasiliense]
MEIRWTQKAQDDLERIYGFASQYSRQHADEVLDRLIIGTTGLADYPRIGVSQTRYEPREVRKILFDDYEVHYEIQHDMIY
IVDLWHTREDR

Download         Length: 276 bp

>T177818 NZ_CP083701:4416392-4416688 [Escherichia coli]
ATGGAAAAACGCACACCACATACACGTTTGAGTCAGGTTAAAAAACTTGTCAATGCCGGGCAAGTTCGTACAACACGTAG
TGCCCTGTTAAATGCAGATGAGTTAGGTTTGGATTTTGATGGTATGTGTAATGTTATCATTGGATTATCAGAGAGCGACT
TTTATAAAAGCATGACCACCTACTCTGATCATACTATCTGGCAGGATGTTTACAGACCCAGGCTTGTTACAGGCCAGGTT
TATCTTAAAATTACGGTAATTCATGACGTACTGATCGTCTCGTTTAAGGAGAAGTAA

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9120.55 Da        Isoelectric Point: 10.0121

>AT177818 WP_203449884.1 NZ_CP063241:460340-460588 [Pectobacterium brasiliense]
MGQPAKQTISAQIPAELAAAVERLAIELDRSKSWVIKEALTAMIEERERRHQRILKGLADVDAGRVVSHTDVIDFANKLK
KS

Download         Length: 249 bp

>AT177818 NZ_CP083701:4416690-4417085 [Escherichia coli]
ATGAAATGTCCGGTTTGCCACCAGGGAGAAATGGTTTCTGGCATTAAAGATATTCCATACACCTTCCGTGGACGAAAAAC
AGTATTGAAAGGTATCCACGGTTTATATTGTGTCCATTGCGAAGAGAGCATCATGAATAAAGAAGAGTCAGATGCTTTCA
TGGCGCAAGTAAAGGCATTTCGGGCTTCGGTGAATGCCGAAACAGTGGCACCTGAATTTATAGTGAAGGTTCGAAAAAAG
CTCTCTCTTACCCAAAAAGAGGCAAGCGAAATTTTTGGGGGAGGTGTAAATGCGTTTTCGCGTTACGAAAAAGGCAATGC
CCAACCTCATCCTTCCACAATCAAACTTTTACGTGTTCTGGATAAGCATCCAGAACTATTGAATGAAATCCGTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References