Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2757208..2757417 | Replicon | chromosome |
| Accession | NZ_CP063224 | ||
| Organism | Enterobacter hormaechei subsp. steigerwaltii strain BD-50-Eh | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2757221..2757324 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2757208..2757417 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IE977_RS13050 | 2753476..2754924 | + | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IE977_RS13055 | 2755031..2755270 | + | 240 | WP_003859885.1 | YebV family protein | - |
| IE977_RS13060 | 2755305..2755949 | - | 645 | WP_015570293.1 | protein-serine/threonine phosphatase | - |
| IE977_RS13065 | 2756117..2757097 | + | 981 | WP_047719460.1 | VirK/YbjX family protein | - |
| IE977_RS13070 | 2757143..2757340 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2757208..2757417 | + | 210 | - | - | Antitoxin |
| - | 2757221..2757324 | - | 104 | - | - | Toxin |
| IE977_RS13075 | 2757466..2757804 | - | 339 | WP_003859787.1 | YebY family protein | - |
| IE977_RS13080 | 2757821..2758690 | - | 870 | WP_045142107.1 | copper homeostasis membrane protein CopD | - |
| IE977_RS13085 | 2758692..2759063 | - | 372 | WP_023296802.1 | CopC domain-containing protein YobA | - |
| IE977_RS13090 | 2759201..2759431 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| IE977_RS13095 | 2759543..2760193 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| IE977_RS13100 | 2760218..2760880 | + | 663 | WP_047733794.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T177757 NZ_CP063224:c2757324-2757221 [Enterobacter hormaechei subsp. steigerwaltii]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT177757 NZ_CP063224:2757208-2757417 [Enterobacter hormaechei subsp. steigerwaltii]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
