Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/RelB(antitoxin)
Location 239174..239786 Replicon chromosome
Accession NZ_CP063198
Organism Streptococcus agalactiae CJB111

Toxin (Protein)


Gene name parE Uniprot ID Q8E1X3
Locus tag ID870_RS01415 Protein ID WP_000384858.1
Coordinates 239174..239509 (-) Length 112 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID Q8E1X2
Locus tag ID870_RS01420 Protein ID WP_000255538.1
Coordinates 239499..239786 (-) Length 96 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ID870_RS01390 234372..235001 + 630 WP_000591148.1 hypothetical protein -
ID870_RS01395 235314..236189 + 876 WP_000770113.1 hypothetical protein -
ID870_RS01400 236225..236659 + 435 WP_001220479.1 hypothetical protein -
ID870_RS01405 236975..238231 + 1257 WP_000122832.1 plasmid recombination protein -
ID870_RS01410 238399..238869 + 471 WP_000130119.1 hypothetical protein -
ID870_RS01415 239174..239509 - 336 WP_000384858.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
ID870_RS01420 239499..239786 - 288 WP_000255538.1 hypothetical protein Antitoxin
ID870_RS01425 240189..241409 - 1221 WP_000156558.1 tyrosine-type recombinase/integrase -
ID870_RS01430 241470..241730 - 261 WP_001196072.1 helix-turn-helix domain-containing protein -
ID870_RS01435 241742..242488 - 747 WP_000966632.1 hypothetical protein -
ID870_RS01440 242674..243465 - 792 WP_001868842.1 hypothetical protein -
ID870_RS01445 243446..243979 - 534 WP_000680721.1 hypothetical protein -
ID870_RS01450 243979..244317 - 339 WP_001187920.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Integrative and Conjugative Element - - 190956..241514 50558


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(7-109)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 112 a.a.        Molecular weight: 13264.04 Da        Isoelectric Point: 5.2388

>T177688 WP_000384858.1 NZ_CP063198:c239509-239174 [Streptococcus agalactiae CJB111]
MDYKKYQIIYAPDVLEKLKEIRDYISQNYSSTSGQHKMEQIISDIEKLEVFPEVGFDADEKYGSKISKYHSTRGYTLSKD
YIVLYHIEEEENRVVIDYLLPTRSDYMKLFK

Download         Length: 336 bp

>T177688 NZ_CP083630:c1633545-1633219 [Leclercia adecarboxylata]
ATGGACTACATCCCGGAAGCGGGCGATATCGTCTGGCTGGATTTTGATCCGCAGTCAGGTCATGAACAGGCAGGCCATCG
CCCTGCGCTGGTTGTTTCCACCGCCACTTACAATGGACGCACCGGTCTGATGCTCTGTTGTCCAGTCACGTCGCAAATCA
AAAACTACCCCTTCGAAGTTGTCATTAGCGGAGCACGCCGCAATGTCGCCCTCGCCGATCAGATCAAAAGTCTGGACTGG
CGCGCGCGTCACGCAGTGAAAAAGGGAACGGCAACTGCCGAAGAACTGGATGCCGTGAGAATGCGGGCGAAGGTTTTGAT
CGGCTAA

Antitoxin


Download         Length: 96 a.a.        Molecular weight: 10921.47 Da        Isoelectric Point: 4.7271

>AT177688 WP_000255538.1 NZ_CP063198:c239786-239499 [Streptococcus agalactiae CJB111]
MVTAEKNRAVTFQANKELVSEAMTVLNKKNLTLSSALRLFLQNVVVTNEVDLLTEEELEKEKLFKQFQAEINKNIEDVRQ
GKFYTSEEVRSELGL

Download         Length: 288 bp

>AT177688 NZ_CP083630:c1633793-1633545 [Leclercia adecarboxylata]
ATGCCGCAAGTCACCGTCAAAAAATGGGGTAACAGCCCTTCTGTCAGGCTGCCTGTCGCAGTTATGCGCGAGGCTGAACT
GCACGTTGACGATGTGGTGAACGTTAACGTAGACGAAGAAGGACGCATTATTTTGACACCCGTCAGGAAGGACGAACCGA
CGCTGGAATCACTGCTCGCTGCGATCACCGACGACAATCTGCATCACGAAGTCACCTTTGGAGAACCGCAAAGTAAGGAG
CTGTTGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0E1EF10

Antitoxin

Source ID Structure
AlphaFold DB A0A0E1EFF9

References