Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2507304..2507575 | Replicon | chromosome |
| Accession | NZ_CP063153 | ||
| Organism | Escherichia coli strain M7424 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2507342..2507445 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2507304..2507575 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| INR48_RS11895 | 2504461..2505900 | + | 1440 | WP_188926226.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| INR48_RS11900 | 2506018..2506254 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| INR48_RS11905 | 2506359..2506550 | + | 192 | WP_001296140.1 | YebW family protein | - |
| INR48_RS11910 | 2506551..2507207 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 2507304..2507575 | + | 272 | - | - | Antitoxin |
| - | 2507342..2507445 | - | 104 | - | - | Toxin |
| INR48_RS11915 | 2507603..2507944 | - | 342 | WP_000976481.1 | YebY family protein | - |
| INR48_RS11920 | 2507957..2508829 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| INR48_RS11925 | 2508833..2509207 | - | 375 | WP_000168743.1 | CopC domain-containing protein YobA | - |
| INR48_RS11930 | 2509346..2509576 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| INR48_RS11935 | 2509678..2510334 | + | 657 | WP_000011654.1 | carbon-nitrogen hydrolase family protein | - |
| INR48_RS11940 | 2510358..2511020 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2501748..2514884 | 13136 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T177648 NZ_CP063153:c2507445-2507342 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT177648 NZ_CP063153:2507304-2507575 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
