Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2069551..2069696 | Replicon | chromosome |
| Accession | NZ_CP063008 | ||
| Organism | Klebsiella pneumoniae strain CriePir120 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2069587..2069689 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2069551..2069696 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJJ08_RS10105 | 2064681..2066741 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| GJJ08_RS10110 | 2066745..2067404 | - | 660 | WP_032435029.1 | exodeoxyribonuclease X | - |
| GJJ08_RS10115 | 2067483..2067713 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| GJJ08_RS10120 | 2067826..2068200 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| GJJ08_RS10125 | 2068204..2069073 | + | 870 | WP_032435031.1 | copper homeostasis membrane protein CopD | - |
| GJJ08_RS10130 | 2069090..2069428 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2069551..2069696 | - | 146 | - | - | Antitoxin |
| - | 2069587..2069689 | + | 103 | - | - | Toxin |
| GJJ08_RS10135 | 2070064..2070207 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| GJJ08_RS10140 | 2070312..2071280 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| GJJ08_RS10145 | 2071437..2072090 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| GJJ08_RS10150 | 2072087..2072278 | - | 192 | WP_002911395.1 | YebW family protein | - |
| GJJ08_RS10155 | 2072376..2072615 | - | 240 | WP_002911393.1 | YebV family protein | - |
| GJJ08_RS10160 | 2072731..2074164 | - | 1434 | WP_073546008.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T177467 NZ_CP063008:2069587-2069689 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT177467 NZ_CP063008:c2069696-2069551 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
