Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1940479..1940623 | Replicon | chromosome |
| Accession | NZ_CP063003 | ||
| Organism | Klebsiella pneumoniae strain CriePir154 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1940515..1940617 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1940479..1940623 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJI94_RS09385 | 1935609..1937669 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| GJI94_RS09390 | 1937673..1938332 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| GJI94_RS09395 | 1938411..1938641 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| GJI94_RS09400 | 1938754..1939128 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| GJI94_RS09405 | 1939132..1940001 | + | 870 | WP_020956678.1 | copper homeostasis membrane protein CopD | - |
| GJI94_RS09410 | 1940018..1940356 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1940479..1940623 | - | 145 | - | - | Antitoxin |
| - | 1940515..1940617 | + | 103 | - | - | Toxin |
| GJI94_RS09415 | 1940750..1941109 | - | 360 | WP_077253379.1 | tyrosine-type recombinase/integrase | - |
| GJI94_RS09420 | 1941108..1941587 | + | 480 | WP_032419797.1 | lysis protein | - |
| GJI94_RS09425 | 1942376..1943881 | + | 1506 | WP_020956680.1 | hypothetical protein | - |
| GJI94_RS09430 | 1944131..1944559 | - | 429 | WP_032419788.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| GJI94_RS09435 | 1944569..1944850 | - | 282 | WP_032419786.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T177448 NZ_CP063003:1940515-1940617 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT177448 NZ_CP063003:c1940623-1940479 [Klebsiella pneumoniae]
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
