Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2595536..2595681 | Replicon | chromosome |
| Accession | NZ_CP062997 | ||
| Organism | Klebsiella pneumoniae strain CriePir197 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2595543..2595645 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2595536..2595681 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJJ12_RS12780 | 2591068..2592501 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GJJ12_RS12785 | 2592617..2592856 | + | 240 | WP_002911393.1 | YebV family protein | - |
| GJJ12_RS12790 | 2592954..2593145 | + | 192 | WP_002911395.1 | YebW family protein | - |
| GJJ12_RS12795 | 2593142..2593795 | - | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| GJJ12_RS12800 | 2593952..2594920 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| GJJ12_RS12805 | 2595025..2595168 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 2595536..2595681 | + | 146 | - | - | Antitoxin |
| - | 2595543..2595645 | - | 103 | - | - | Toxin |
| GJJ12_RS12810 | 2595804..2596142 | - | 339 | WP_002911404.1 | YebY family protein | - |
| GJJ12_RS12815 | 2596159..2597028 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| GJJ12_RS12820 | 2597032..2597406 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| GJJ12_RS12825 | 2597519..2597749 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| GJJ12_RS12830 | 2597828..2598487 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| GJJ12_RS12835 | 2598491..2600551 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T177426 NZ_CP062997:c2595645-2595543 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT177426 NZ_CP062997:2595536-2595681 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
