Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1884584..1884729 | Replicon | chromosome |
| Accession | NZ_CP062986 | ||
| Organism | Klebsiella pneumoniae strain CriePir26 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1884620..1884722 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1884584..1884729 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJJ26_RS09155 (GJJ26_009155) | 1879714..1881774 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| GJJ26_RS09160 (GJJ26_009160) | 1881778..1882437 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| GJJ26_RS09165 (GJJ26_009165) | 1882516..1882746 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| GJJ26_RS09170 (GJJ26_009170) | 1882859..1883233 | + | 375 | WP_071058708.1 | CopC domain-containing protein YobA | - |
| GJJ26_RS09175 (GJJ26_009175) | 1883237..1884106 | + | 870 | WP_032420215.1 | copper homeostasis membrane protein CopD | - |
| GJJ26_RS09180 (GJJ26_009180) | 1884123..1884461 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1884584..1884729 | - | 146 | - | - | Antitoxin |
| - | 1884620..1884722 | + | 103 | - | - | Toxin |
| GJJ26_RS09185 (GJJ26_009185) | 1885097..1885240 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| GJJ26_RS09190 (GJJ26_009190) | 1885345..1886313 | - | 969 | WP_073971755.1 | VirK/YbjX family protein | - |
| GJJ26_RS09195 (GJJ26_009195) | 1886470..1887123 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| GJJ26_RS09200 (GJJ26_009200) | 1887120..1887311 | - | 192 | WP_002911395.1 | YebW family protein | - |
| GJJ26_RS09205 (GJJ26_009205) | 1887409..1887648 | - | 240 | WP_002911393.1 | YebV family protein | - |
| GJJ26_RS09210 (GJJ26_009210) | 1887764..1889197 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T177404 NZ_CP062986:1884620-1884722 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT177404 NZ_CP062986:c1884729-1884584 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
