Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 341729..342000 | Replicon | chromosome |
| Accession | NZ_CP062910 | ||
| Organism | Escherichia coli O112ab:H8 strain Res13-Lact-EA06-22 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 341859..341962 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 341729..342000 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMP05_RS01840 | 338284..338946 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IMP05_RS01845 | 338970..339626 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| IMP05_RS01850 | 339728..339958 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IMP05_RS01855 | 340097..340471 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| IMP05_RS01860 | 340475..341347 | + | 873 | WP_195717767.1 | copper homeostasis membrane protein CopD | - |
| IMP05_RS01865 | 341360..341701 | + | 342 | WP_024243786.1 | YebY family protein | - |
| - | 341729..342000 | - | 272 | - | - | Antitoxin |
| - | 341859..341962 | + | 104 | - | - | Toxin |
| IMP05_RS01870 | 342097..342753 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| IMP05_RS01875 | 342754..342945 | - | 192 | WP_001296140.1 | YebW family protein | - |
| IMP05_RS01880 | 343050..343286 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IMP05_RS01885 | 343404..344843 | - | 1440 | WP_000057024.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T177278 NZ_CP062910:341859-341962 [Escherichia coli O112ab:H8]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT177278 NZ_CP062910:c342000-341729 [Escherichia coli O112ab:H8]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
