Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1979681..1979952 | Replicon | chromosome |
| Accession | NZ_CP062901 | ||
| Organism | Escherichia coli O152:H23 strain Res13-Lact-ER01-35 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1979811..1979914 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1979681..1979952 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMP37_RS09445 | 1976236..1976898 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IMP37_RS09450 | 1976922..1977578 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| IMP37_RS09455 | 1977680..1977910 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IMP37_RS09460 | 1978049..1978423 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| IMP37_RS09465 | 1978427..1979299 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| IMP37_RS09470 | 1979312..1979653 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1979681..1979952 | - | 272 | - | - | Antitoxin |
| - | 1979811..1979914 | + | 104 | - | - | Toxin |
| IMP37_RS09475 | 1980049..1980705 | + | 657 | WP_087650864.1 | protein-serine/threonine phosphatase | - |
| IMP37_RS09480 | 1980706..1980897 | - | 192 | WP_001296140.1 | YebW family protein | - |
| IMP37_RS09485 | 1981002..1981238 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IMP37_RS09490 | 1981356..1982795 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T177228 NZ_CP062901:1979811-1979914 [Escherichia coli O152:H23]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT177228 NZ_CP062901:c1979952-1979681 [Escherichia coli O152:H23]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
