Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2019803..2020074 | Replicon | chromosome |
| Accession | NZ_CP062895 | ||
| Organism | Escherichia coli strain Res13-Lact-ER02-39 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2019934..2020036 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2019803..2020074 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMP38_RS09670 | 2016358..2017020 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IMP38_RS09675 | 2017044..2017700 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| IMP38_RS09680 | 2017802..2018032 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IMP38_RS09685 | 2018171..2018545 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| IMP38_RS09690 | 2018549..2019421 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| IMP38_RS09695 | 2019434..2019775 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2019803..2020074 | - | 272 | - | - | Antitoxin |
| - | 2019934..2020036 | + | 103 | - | - | Toxin |
| IMP38_RS09700 | 2020171..2020827 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| IMP38_RS09705 | 2020828..2021019 | - | 192 | WP_001313035.1 | YebW family protein | - |
| IMP38_RS09710 | 2021124..2021360 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IMP38_RS09715 | 2021478..2022917 | - | 1440 | WP_130082408.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T177192 NZ_CP062895:2019934-2020036 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT177192 NZ_CP062895:c2020074-2019803 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCACTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCACTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
