Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 845526..845797 | Replicon | chromosome |
| Accession | NZ_CP062871 | ||
| Organism | Escherichia coli strain Res13-Lact-PEA14-20 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 845564..845667 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 845526..845797 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMP76_RS04200 | 842683..844122 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IMP76_RS04205 | 844240..844476 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IMP76_RS04210 | 844581..844772 | + | 192 | WP_001296140.1 | YebW family protein | - |
| IMP76_RS04215 | 844773..845429 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 845526..845797 | + | 272 | - | - | Antitoxin |
| - | 845564..845667 | - | 104 | - | - | Toxin |
| IMP76_RS04220 | 845825..846166 | - | 342 | WP_000976492.1 | YebY family protein | - |
| IMP76_RS04225 | 846179..847051 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| IMP76_RS04230 | 847055..847429 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| IMP76_RS04235 | 847568..847798 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IMP76_RS04240 | 847900..848556 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| IMP76_RS04245 | 848580..849242 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T177042 NZ_CP062871:c845667-845564 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT177042 NZ_CP062871:845526-845797 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
