Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1991253..1991524 | Replicon | chromosome |
| Accession | NZ_CP062868 | ||
| Organism | Escherichia coli strain Res13-Lact-PEB01-20 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1991383..1991486 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1991253..1991524 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMP84_RS09490 | 1987808..1988470 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IMP84_RS09495 | 1988494..1989150 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| IMP84_RS09500 | 1989252..1989482 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IMP84_RS09505 | 1989621..1989995 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| IMP84_RS09510 | 1989999..1990871 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| IMP84_RS09515 | 1990884..1991225 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1991253..1991524 | - | 272 | - | - | Antitoxin |
| - | 1991383..1991486 | + | 104 | - | - | Toxin |
| IMP84_RS09520 | 1991621..1992277 | + | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| IMP84_RS09525 | 1992278..1992469 | - | 192 | WP_001296140.1 | YebW family protein | - |
| IMP84_RS09530 | 1992574..1992810 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IMP84_RS09535 | 1992928..1994367 | - | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T177004 NZ_CP062868:1991383-1991486 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT177004 NZ_CP062868:c1991524-1991253 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
