Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2525903..2526174 | Replicon | chromosome |
| Accession | NZ_CP062865 | ||
| Organism | Escherichia coli O39:H21 strain Res13-Lact-PEB08-01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2525941..2526044 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2525903..2526174 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMP90_RS12125 | 2523060..2524499 | + | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IMP90_RS12130 | 2524617..2524853 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IMP90_RS12135 | 2524958..2525149 | + | 192 | WP_001296140.1 | YebW family protein | - |
| IMP90_RS12140 | 2525150..2525806 | - | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| - | 2525903..2526174 | + | 272 | - | - | Antitoxin |
| - | 2525941..2526044 | - | 104 | - | - | Toxin |
| IMP90_RS12145 | 2526202..2526543 | - | 342 | WP_000976492.1 | YebY family protein | - |
| IMP90_RS12150 | 2526556..2527428 | - | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| IMP90_RS12155 | 2527432..2527806 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| IMP90_RS12160 | 2527945..2528175 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IMP90_RS12165 | 2528277..2528933 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| IMP90_RS12170 | 2528957..2529619 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T176964 NZ_CP062865:c2526044-2525941 [Escherichia coli O39:H21]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT176964 NZ_CP062865:2525903-2526174 [Escherichia coli O39:H21]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
