Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1936394..1936665 | Replicon | chromosome |
| Accession | NZ_CP062853 | ||
| Organism | Escherichia coli O9:H10 strain Res13-Lact-PEB20-37-A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1936524..1936627 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1936394..1936665 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMQ02_RS09180 | 1932949..1933611 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IMQ02_RS09185 | 1933635..1934291 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| IMQ02_RS09190 | 1934393..1934623 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IMQ02_RS09195 | 1934762..1935136 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| IMQ02_RS09200 | 1935140..1936012 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| IMQ02_RS09205 | 1936025..1936366 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1936394..1936665 | - | 272 | - | - | Antitoxin |
| - | 1936524..1936627 | + | 104 | - | - | Toxin |
| IMQ02_RS09210 | 1936762..1937418 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| IMQ02_RS09215 | 1937419..1937610 | - | 192 | WP_001338167.1 | YebW family protein | - |
| IMQ02_RS09220 | 1937715..1937951 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| IMQ02_RS09225 | 1938069..1939508 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T176875 NZ_CP062853:1936524-1936627 [Escherichia coli O9:H10]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT176875 NZ_CP062853:c1936665-1936394 [Escherichia coli O9:H10]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
