Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vagCD/VapC-VagC
Location 137023..137599 Replicon plasmid unnamednovel_0
Accession NZ_CP062837
Organism Escherichia coli strain Res13-Lact-PER04-33

Toxin (Protein)


Gene name vagD Uniprot ID -
Locus tag IMQ22_RS24805 Protein ID WP_195686660.1
Coordinates 137342..137599 (+) Length 86 a.a.

Antitoxin (Protein)


Gene name vagC Uniprot ID -
Locus tag IMQ22_RS24800 Protein ID WP_029488776.1
Coordinates 137023..137253 (+) Length 77 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IMQ22_RS24780 132157..132963 - 807 WP_097423266.1 site-specific integrase -
IMQ22_RS24785 132964..133269 - 306 WP_001159868.1 type II toxin-antitoxin system toxin CcdB -
IMQ22_RS24790 133271..133489 - 219 WP_000813634.1 type II toxin-antitoxin system antitoxin CcdA -
IMQ22_RS24795 134203..136824 + 2622 WP_023063774.1 ABC transporter -
IMQ22_RS24800 137023..137253 + 231 WP_029488776.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin
IMQ22_RS24805 137342..137599 + 258 WP_195686660.1 type II toxin-antitoxin system VapC family toxin Toxin
IMQ22_RS24810 137755..138963 - 1209 WP_000198533.1 IS91 family transposase -
IMQ22_RS24815 138944..139216 - 273 WP_000019163.1 hypothetical protein -
IMQ22_RS24820 139335..139552 - 218 Protein_153 transposase -
IMQ22_RS24825 139553..140083 - 531 WP_000348883.1 GNAT family N-acetyltransferase -
IMQ22_RS24830 140087..140356 - 270 WP_001275013.1 DUF1778 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..141255 141255
- flank IS/Tn - - 137755..138963 1208


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

SpoVT-AbrB domain

(7-45)


Sequences

Toxin        


Download         Length: 86 a.a.        Molecular weight: 8994.24 Da        Isoelectric Point: 7.8646

>T176809 WP_195686660.1 NZ_CP062837:137342-137599 [Escherichia coli]
VFSHRIVVSAITYSEMRFGASGPKASPRHVQLVDKFCPCLDAILSWDRAAVDGTTDIKVALRQAGTPIGQNDTAIAGPEA
GRIGN

Download         Length: 258 bp

>T176809 NZ_CP082954:1966860-1967039 [Salmonella enterica subsp. arizonae]
ATGGATAGCAGAAGCGCAATAGCAATGATTGAAGCTGATGGATGGTATCTGGTGAGAGTGAAAGGGAGCCATCATCAGTT
CAAGCACCCAACTAAAAAGGGGTTAGTAACGGTAAAACACCCCCAAAAAGACATACCATTACCAACGCTCAAAAGTATCA
AGAAACAGGCGGGGCTTTAA

Antitoxin


Download         Length: 77 a.a.        Molecular weight: 8808.91 Da        Isoelectric Point: 4.6286

>AT176809 WP_029488776.1 NZ_CP062837:137023-137253 [Escherichia coli]
MRTVSIVKNGNNRAIHLPRDLDFERVRELEIVREGDSIILRPVQPNWGSFAQLEKADPDFMAERENVVSDEGRFDL

Download         Length: 231 bp

>AT176809 NZ_CP082954:1967068-1967469 [Salmonella enterica subsp. arizonae]
ATGTTATATCCGGTTGCTATTGATAAAGGCGATTCATCCTTCGGTGTTCGCGTACCTGATATTCCTGGTTGTTTTTCTGG
TGGCGACAACTATCAGGACGCACTCGAAAGCGCTCGTGAAGCTATTGATGCTCATCTTGAACTGCTCGTTGAAGATGGTG
AGGCTATACCAGAAGCTACCAGTGTGGAAAAATGGCTGTCCGATCCAGATTATGACGGTGTAGTTTGGGCTTTAGTTGAT
GTGGATATCACCCGATTAATGGGGAAAGCGGAAAAAATCAATGTGACGCTTCCCTCACTGTTAATCCGCCGTATCGATCA
GTTTGTTGCCGCCCATCCAGAATACGGTAGTCGTTCCGGTTTCCTCTCGCGCGTGGCCGCAGATAAAGTGACTGGTTTGT
GA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References