Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 279718..279989 | Replicon | chromosome |
| Accession | NZ_CP062824 | ||
| Organism | Escherichia coli O167:H26 strain Res13-Lact-PER13-34 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 279848..279951 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 279718..279989 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMQ31_RS01400 | 276273..276935 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IMQ31_RS01405 | 276959..277615 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| IMQ31_RS01410 | 277717..277947 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IMQ31_RS01415 | 278086..278460 | + | 375 | WP_000168743.1 | CopC domain-containing protein YobA | - |
| IMQ31_RS01420 | 278464..279336 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| IMQ31_RS01425 | 279349..279690 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 279718..279989 | - | 272 | - | - | Antitoxin |
| - | 279848..279951 | + | 104 | - | - | Toxin |
| IMQ31_RS01430 | 280086..280742 | + | 657 | WP_033869927.1 | protein-serine/threonine phosphatase | - |
| IMQ31_RS01435 | 280743..280934 | - | 192 | WP_001296140.1 | YebW family protein | - |
| IMQ31_RS01440 | 281039..281275 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IMQ31_RS01445 | 281393..282832 | - | 1440 | WP_033869949.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T176709 NZ_CP062824:279848-279951 [Escherichia coli O167:H26]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT176709 NZ_CP062824:c279989-279718 [Escherichia coli O167:H26]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
