Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | ccdAB/CcdA(antitoxin) |
| Location | 132968..133493 | Replicon | plasmid unnamednovel_0 |
| Accession | NZ_CP062820 | ||
| Organism | Escherichia coli strain Res13-Sevr-PER06-05-b-A | ||
Toxin (Protein)
| Gene name | ccdB | Uniprot ID | V0SSI5 |
| Locus tag | IMQ58_RS24820 | Protein ID | WP_001159868.1 |
| Coordinates | 132968..133273 (-) | Length | 102 a.a. |
Antitoxin (Protein)
| Gene name | ccdA | Uniprot ID | S1PPD8 |
| Locus tag | IMQ58_RS24825 | Protein ID | WP_000813634.1 |
| Coordinates | 133275..133493 (-) | Length | 73 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMQ58_RS24795 | 128800..129444 | - | 645 | WP_029488797.1 | replication initiation protein RepE | - |
| IMQ58_RS24800 | 129472..130377 | - | 906 | Protein_143 | IS3 family transposase | - |
| IMQ58_RS24805 | 130442..131593 | + | 1152 | WP_195686658.1 | IS30-like element IS30 family transposase | - |
| IMQ58_RS24810 | 131606..131908 | - | 303 | Protein_145 | transposase | - |
| IMQ58_RS24815 | 132161..132967 | - | 807 | WP_097423266.1 | site-specific integrase | - |
| IMQ58_RS24820 | 132968..133273 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin |
| IMQ58_RS24825 | 133275..133493 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin |
| IMQ58_RS24830 | 134207..136828 | + | 2622 | WP_023063774.1 | ABC transporter | - |
| IMQ58_RS24835 | 137027..137257 | + | 231 | WP_029488776.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| IMQ58_RS24840 | 137346..137603 | + | 258 | WP_195686660.1 | type II toxin-antitoxin system VapC family toxin | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | - | - | 1..141259 | 141259 | |
| - | flank | IS/Tn | - | - | 137759..138967 | 1208 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 a.a. Molecular weight: 11706.51 Da Isoelectric Point: 6.4674
>T176698 WP_001159868.1 NZ_CP062820:c133273-132968 [Escherichia coli]
MQFKVYTYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSDKVSRELYPVVHIGDESWRMMTTDMASVPVSVIGEEV
ADLSHRENDIKNAINLMFWGI
MQFKVYTYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSDKVSRELYPVVHIGDESWRMMTTDMASVPVSVIGEEV
ADLSHRENDIKNAINLMFWGI
Download Length: 306 bp
>T176698 NZ_CP082909:c2542981-2542409 [Endozoicomonas sp. 4G]
ATGGCTTCTCAATTTACTGCTGTTTTTGATGCCTGTGTCCTTTATCCCTCGGTGTTAAGAGACGTACTGTTAAGGTTGGC
GATAACAGACACTTTTCGCGCCAGGTGGACTGACAAAATTCATGATGAGTGGACTCGCAATCTGAAAGCCAATCGTCCAG
ATATCGATGAAAACTACTTGAACAAAACGCGACAGTTGATGAATGTTCATGTCCGGGATGCATTGGTTGAAGGCTTCGAG
CATCTGATTGATTCTGTTCAATTACCTGATCAGGATGACCGGCATGTTGTTGCAGCAGCAATTTCCGCCAACGCTGATGT
TATAGTCACATATAATCTGAAAGACTTTCCTGATGAAGCCCTTGCCCCGTATGAGCTTCAGGCTATTCATCCTGACAGCT
TTATTCATGACCTGATCGACCTGCACCCGGCAGAATTCATTGGTGTCATTCGTTCAGCGAGAGCTGCCTTAAAAAATCCA
CCACTAACGGTTGATGAGTACCTGGGTAGATTGAGAAAGCAAAGACTGCCGGAAACGGTCACCTGGCTAGAGTCAATGAA
GCTCATTTTGTAA
ATGGCTTCTCAATTTACTGCTGTTTTTGATGCCTGTGTCCTTTATCCCTCGGTGTTAAGAGACGTACTGTTAAGGTTGGC
GATAACAGACACTTTTCGCGCCAGGTGGACTGACAAAATTCATGATGAGTGGACTCGCAATCTGAAAGCCAATCGTCCAG
ATATCGATGAAAACTACTTGAACAAAACGCGACAGTTGATGAATGTTCATGTCCGGGATGCATTGGTTGAAGGCTTCGAG
CATCTGATTGATTCTGTTCAATTACCTGATCAGGATGACCGGCATGTTGTTGCAGCAGCAATTTCCGCCAACGCTGATGT
TATAGTCACATATAATCTGAAAGACTTTCCTGATGAAGCCCTTGCCCCGTATGAGCTTCAGGCTATTCATCCTGACAGCT
TTATTCATGACCTGATCGACCTGCACCCGGCAGAATTCATTGGTGTCATTCGTTCAGCGAGAGCTGCCTTAAAAAATCCA
CCACTAACGGTTGATGAGTACCTGGGTAGATTGAGAAAGCAAAGACTGCCGGAAACGGTCACCTGGCTAGAGTCAATGAA
GCTCATTTTGTAA
Antitoxin
Download Length: 73 a.a. Molecular weight: 8372.34 Da Isoelectric Point: 4.7405
>AT176698 WP_000813634.1 NZ_CP062820:c133493-133275 [Escherichia coli]
MKQRITVTVDSDSYQLLKAYDVNISGLVSTTMQNEARRLRAERWKAENQEGMAEVARFIEMNGSFADENRDW
MKQRITVTVDSDSYQLLKAYDVNISGLVSTTMQNEARRLRAERWKAENQEGMAEVARFIEMNGSFADENRDW
Download Length: 219 bp
>AT176698 NZ_CP082909:c2543439-2542981 [Endozoicomonas sp. 4G]
ATGACTACAAAAGACAAACTGACCTTGCCCACCGCCGAAGAGATTGCGATTGCACAAGAGTGCAGCCGGGAGATTTCAGC
CTTTCTTGAGACGGGTTCTGAATCTCAGCAAATTGATATCAGCTCTAAGGATGGGGAAAAGCACGCGTTGTCGATTCCTA
CCAGAGCATTGAGTCTGCTGGTTGATATTCTGGCGCAACTTGGACAGGGTAATGCGGTAAAAATCATCCCGATCCATGCG
GAACTGACCACTCAGCAAGCCGCTGATATTCTCAATGTTTCCCGTCCTTATCTGGTCAGAATGCTGGATGAAGGGGAAAT
TCCTCATCACAAGGTTGGTCGGCATCGTAGAGTCCGTTATCAGGATTTAATGGATTACAAAGCGGCTATAGACGGTAAAC
GACTCTCAGCTTTGGATGAGTTGTCAGCTCTCTCGCAGATGAACGATCCGGAGTATTAA
ATGACTACAAAAGACAAACTGACCTTGCCCACCGCCGAAGAGATTGCGATTGCACAAGAGTGCAGCCGGGAGATTTCAGC
CTTTCTTGAGACGGGTTCTGAATCTCAGCAAATTGATATCAGCTCTAAGGATGGGGAAAAGCACGCGTTGTCGATTCCTA
CCAGAGCATTGAGTCTGCTGGTTGATATTCTGGCGCAACTTGGACAGGGTAATGCGGTAAAAATCATCCCGATCCATGCG
GAACTGACCACTCAGCAAGCCGCTGATATTCTCAATGTTTCCCGTCCTTATCTGGTCAGAATGCTGGATGAAGGGGAAAT
TCCTCATCACAAGGTTGGTCGGCATCGTAGAGTCCGTTATCAGGATTTAATGGATTACAAAGCGGCTATAGACGGTAAAC
GACTCTCAGCTTTGGATGAGTTGTCAGCTCTCTCGCAGATGAACGATCCGGAGTATTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|