Detailed information of TA system TA176555

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): ccdAB/CcdA(antitoxin)
• Location: 4706466..4707016
• Replicon: chromosome
• Accession: NZ_CP062780
• Organism: Escherichia coli O157:H7 strain Z1769

Toxin (Protein)

• Gene name: ccdB
• Uniprot ID: D3H432
• Locus tag: ILQ49_RS23620
• Protein ID: WP_001160975.1
• Coordinates: 4706466..4706780 (-)
• Length: 105 a.a.

Antitoxin (Protein)

• Gene name: ccdA
• Uniprot ID: V0VEX8
• Locus tag: ILQ49_RS23625
• Protein ID: WP_000125566.1
• Coordinates: 4706783..4707016 (-)
• Length: 78 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
ILQ49_RS23595	4702141..4703427	+	1287	WP_000800457.1	peptidylprolyl isomerase SurA	-
ILQ49_RS23600	4703427..4704416	+	990	WP_000241259.1	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	-
ILQ49_RS23605	4704413..4705234	+	822	WP_001065380.1	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	-
ILQ49_RS23610	4705237..4705614	+	378	WP_000610901.1	Co2+/Mg2+ efflux protein ApaG	-
ILQ49_RS23615	4705621..4706469	+	849	WP_000257187.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH	-
ILQ49_RS23620	4706466..4706780	-	315	WP_001160975.1	CcdB family protein	Toxin
ILQ49_RS23625	4706783..4707016	-	234	WP_000125566.1	type II toxin-antitoxin system CcdA family antitoxin	Antitoxin
ILQ49_RS23630	4707102..4707581	-	480	WP_000624372.1	type 3 dihydrofolate reductase	-
ILQ49_RS23635	4707773..4709635	-	1863	WP_000377184.1	glutathione-regulated potassium-efflux system protein KefC	-
ILQ49_RS23640	4709628..4710158	-	531	WP_000600700.1	glutathione-regulated potassium-efflux system oxidoreductase KefF	-
ILQ49_RS23645	4710266..4711597	-	1332	WP_001183177.1	MFS transporter	-
ILQ49_RS23650	4711655..4711942	-	288	WP_000203741.1	ferredoxin-like protein FixX	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin CcdB (2-103)

Antitoxin

• Post-segregation antitoxin CcdA (8-77)

Sequences

Toxin

Protein

• Length: 105 a.a.
• Molecular weight: 11711.76 Da
• Isoelectric Point: 9.8517

>T176555 WP_001160975.1 NZ_CP062780:c4706780-4706466 [Escherichia coli O157:H7]
MQFTVYRSRSRNAAFPFVIDVTSDIIGVINRRIVIPLTPIERFSRIRPPERLNPILLLVDGKEYVLMTHETATVPVNALG
TKFCDASAHRTLIKGALDFMLDGI

Nucleotide

• Length: 315 bp

>T176555 NZ_CP082833:c1032762-1032487 [Citrobacter rodentium NBRC 105723 = DSM 16636]
ATGAGACAGCAGGTGTTATCCTTACGAAAAAAGCAAAGAAATACGCTGGAACAGCTCTTTAAAACACCTGTACCACAAGG
AATAAAGTGGACAGAGATAGAATCCCTGGTGAAGGCGTTGGGCGGCGTAATTAAGGAAGGGCGCGGCTCGCGCTGCAAAT
TCTTATTGAACAACAGTATTGCCTGTTTTCACCGTCCTCATCCTTCACCCGATACGGATAAAGGCGCAGTGGAGAGTGTG
CGTGACTGGCTACTCAGCATAGGGGTTAAACCATGA

Antitoxin

Protein

• Length: 78 a.a.
• Molecular weight: 8530.53 Da
• Isoelectric Point: 5.8062

>AT176555 WP_000125566.1 NZ_CP062780:c4707016-4706783 [Escherichia coli O157:H7]
MTAKRTTQSVTVTVDRELVNRARDAGLNMSATLTVALNAELKKHAATRWREENAEAIAALNQLADETGCFSDEYRSF

Nucleotide

• Length: 234 bp

>AT176555 NZ_CP082833:c1032490-1032131 [Citrobacter rodentium NBRC 105723 = DSM 16636]
ATGATTAAACCTAAAACGCCAAATGCAATGGAAATCGCGGGGCACCCTGCGGTAATCAATTATGTGCCTGAGCTAAACGC
GTTTCGCGGTAAGTTTCTTGGGCTATCAGGACATTGCGATTTTGTCTCGGATAGCATCCAGGGCTTGCAGGAGGAGGGCG
AGATCTCTTTAAACGAATACCTTGAAGATTGCCGGGAGGCGGGTATTGAACCTTATGCGCATGCGGAAAAAATGAAAACA
TTTACGCTTCGCTATCCGGAGTCATTTGGCGAACGTTTAAGTTCCGCGGCGGCAGAAGAACAGGTTTCAGTGAATACCTG
GATCATTGATACGCTTAGCAAACGTCTGAAGCAGGCTTAG

Structures

Antitoxin

• AlphaFold DB: A0A7U9LTM9