Detailed information of TA system TA176236

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): ataRT/DUF1778(antitoxin)
• Location: 401403..402203
• Replicon: chromosome
• Accession: NZ_CP062758
• Organism: Escherichia coli O157:H7 strain Z892

Toxin (Protein)

• Gene name: ataT
• Uniprot ID: A0A891SNC1
• Locus tag: ILQ38_RS01885
• Protein ID: WP_000342448.1
• Coordinates: 401676..402203 (+)
• Length: 176 a.a.

Antitoxin (Protein)

• Gene name: ataR
• Uniprot ID: F4NNI1
• Locus tag: ILQ38_RS01880
• Protein ID: WP_001277108.1
• Coordinates: 401403..401669 (+)
• Length: 89 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
ILQ38_RS01860	397061..397729	+	669	WP_000617723.1	cell division ATP-binding protein FtsE	-
ILQ38_RS01865	397722..398780	+	1059	WP_001042003.1	permease-like cell division protein FtsX	-
ILQ38_RS01870	399025..399879	+	855	WP_000130217.1	RNA polymerase sigma factor RpoH	-
ILQ38_RS01875	400150..401253	+	1104	WP_001021996.1	branched chain amino acid ABC transporter substrate-binding protein LivJ	-
ILQ38_RS01880	401403..401669	+	267	WP_001277108.1	DUF1778 domain-containing protein	Antitoxin
ILQ38_RS01885	401676..402203	+	528	WP_000342448.1	GNAT family N-acetyltransferase	Toxin
ILQ38_RS01890	402200..402583	-	384	WP_000778769.1	aspartate 1-decarboxylase autocleavage activator PanM	-
ILQ38_RS01895	403007..404116	+	1110	WP_001301528.1	high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK	-
ILQ38_RS01900	404164..405090	+	927	WP_001295111.1	high-affinity branched-chain amino acid ABC transporter permease LivH	-
ILQ38_RS01905	405087..406364	+	1278	WP_000803797.1	branched chain amino acid ABC transporter permease LivM	-
ILQ38_RS01910	406361..407128	+	768	WP_000082101.1	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• GNAT domain (88-150)

Antitoxin

• Vibrio phage ICP1, Orf50 (8-86)

Sequences

Toxin

Protein

• Length: 176 a.a.
• Molecular weight: 19692.68 Da
• Isoelectric Point: 7.3232

>T176236 WP_000342448.1 NZ_CP062758:401676-402203 [Escherichia coli O157:H7]
MDDLTIEILTDDADYDLQRFDCGEEALNLFLTTHLVRQHRNKILRAYILCRNTPERQVLGYYTLCGSCFERAALPSKSKQ
KKIPYKNIPSVTLGRLAIDRSLQGQGWGATLVAHAMKVVWSASLAVGIHGLFVEALNEKAHTFYKSLGFIPLVGENENAL
FFPTKSIELLFTQSD

Nucleotide

• Length: 528 bp

>T176236 NZ_CP082773:c1386727-1386509 [Escherichia coli O99:H6]
ATGTCCGAAAAACCTTTAACGAAAACCGATTATTTAATGCGTTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGTGT
TATCGAGAAAAATAAATACGAATTATCAGATAATGAACTGGCGGTATTTTACTCAGCCGCAGATCACCGCCTCGCCGAAT
TGACCATGAATAAACTGTACGACAAGATCCCTTCCTCAGTATGGAAATTTATTCGCTAA

Antitoxin

Protein

• Length: 89 a.a.
• Molecular weight: 9910.31 Da
• Isoelectric Point: 10.0863

>AT176236 WP_001277108.1 NZ_CP062758:401403-401669 [Escherichia coli O157:H7]
MSAVKKQRIDLRLTDDDKSMIEEAAAISNQSVSQFMLNSASQRAAEVIEQHRRVILNEESWTRVMDALSNPPSPGEKLKR
AAKRLQGM

Nucleotide

• Length: 267 bp

>AT176236 NZ_CP082773:c1387128-1386754 [Escherichia coli O99:H6]
ATGGATGAATACTCACCCAAAAGACATGATATCGCACAGCTTAAGTTTCTCTGTGAAACCCTGTATCATGACTGCCTTGC
AAACCTTGAAGAAAGCAATCATGGCTGGGTTAACGACCCAACCTCGGCGATCAACCTCCAGTTGAATGAACTGATTGAGC
ATATTGCGACCTTCGCACTTAATTACAAAATTAAGTATAATGAAGACAATAAGCTCATTGAGCAGATCGACGAATATCTG
GATGACACCTTTATGTTGTTCAGTAGTTATGGTATTAATATGCAGGATCTTCAGAAATGGCGGAAGTCAGGTAATCGACT
ATTCCGTTGTTTTGTCAATGCGACGAAAGAGAATCCTGCGAGTTTATCTTGTTAG

Structures

Toxin

• PDB: 6GTS

Antitoxin

• AlphaFold DB: A0A829CN24