Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 4213604..4214222 Replicon chromosome
Accession NZ_CP062744
Organism Escherichia coli O157:H7 strain Z1615

Toxin (Protein)


Gene name Hha Uniprot ID H5UYE2
Locus tag ILQ43_RS21330 Protein ID WP_001291435.1
Coordinates 4214004..4214222 (+) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID S1PTH5
Locus tag ILQ43_RS21325 Protein ID WP_000344800.1
Coordinates 4213604..4213978 (+) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ILQ43_RS21315 4208693..4209886 + 1194 WP_001295324.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -
ILQ43_RS21320 4209909..4213058 + 3150 WP_001132452.1 multidrug efflux RND transporter permease subunit -
ILQ43_RS21325 4213604..4213978 + 375 WP_000344800.1 Hha toxicity modulator TomB Antitoxin
ILQ43_RS21330 4214004..4214222 + 219 WP_001291435.1 hemolysin expression modulator Hha Toxin
ILQ43_RS21335 4214394..4214945 + 552 WP_000102553.1 maltose O-acetyltransferase -
ILQ43_RS21340 4215061..4215531 + 471 WP_000136192.1 YlaC family protein -
ILQ43_RS21345 4215695..4217245 + 1551 WP_001301851.1 cyclic-guanylate-specific phosphodiesterase PdeB -
ILQ43_RS21350 4217287..4217640 - 354 WP_000878140.1 DUF1428 domain-containing protein -
ILQ43_RS21360 4218019..4218330 + 312 WP_000409911.1 MGMT family protein -
ILQ43_RS21365 4218363..4218935 - 573 WP_000779831.1 YbaY family lipoprotein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-117)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T176078 WP_001291435.1 NZ_CP062744:4214004-4214222 [Escherichia coli O157:H7]
MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR

Download         Length: 219 bp

>T176078 NZ_CP082351:1467981-1468391 [Providencia rettgeri]
GTGGTCCTGTGGAAATCTAATCTCTCCATTTCATGGAAAACTCAATTGTTCTCAACCTGTGTTCATGGGGTCATTGGGAT
GTTTTTGCTTCTGACTCCATGGTCTCCTGGTAACTCAATGATATGGCTGCCGCTACTAGTGGTTGTCGTTGCGAGTTGGG
CAAAGAGTCAGAAAAATATCAGTAAAATAAAAGGGGTTGCTGTACTGGTTAATGGCAATAAGCTTCAGTGGAAGAAAAAC
GAGTGGCGAATACTGAAAGCACCTTGGCTTACTCGTTACGGTATATTGCTGACATTAGAAGCGTTACAAGGCAAACCGCA
AAAGATCCATTTATGGGTAGCTAAAGACGCACTTTCGGAGGAAAATTGGCGTAATTTAAACCAGTTATTGCTGCAATACC
CTGATATCTAG

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14557.39 Da        Isoelectric Point: 4.7395

>AT176078 WP_000344800.1 NZ_CP062744:4213604-4213978 [Escherichia coli O157:H7]
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAINLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYL
DDTFMLFSSYGINMQDLQKWRKSGNRLFRCFVNATKENPASLSC

Download         Length: 375 bp

>AT176078 NZ_CP082351:1467734-1468000 [Providencia rettgeri]
ATGGATATTGAGAATAAAGCGCGAATTCATTGGGCATGCCGCCGTGGTATGCGTGAATTAGATATTTCAATCATGCCGTT
TTTTGAGTATGAATATGATAACCTGACAACCCAAGATAAGCAGGTATTTGTTCGATTATTAGAATGTGCGGACCCTGACT
TATTCAACTGGTTAATGAATCATGGCCGCCCAGATGATGACGAACTTTTTCGTATGATTAAACTGATTCAGGAAAAAAAT
AAAAATCGTGGTCCTGTGGAAATCTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 2MW2
PDB 1JW2

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9QBQ5

References