Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type V Classification (family/domain) ghoTS/ghoT-GhoS
Location 5056309..5056806 Replicon chromosome
Accession NZ_CP062742
Organism Escherichia coli O157:H7 strain Z1626

Toxin (Protein)


Gene name ghoT Uniprot ID L4JJG6
Locus tag ILQ44_RS25160 Protein ID WP_001173343.1
Coordinates 5056309..5056482 (-) Length 58 a.a.

Antitoxin (Protein)


Gene name ghoS Uniprot ID L4JK92
Locus tag ILQ44_RS25165 Protein ID WP_000398619.1
Coordinates 5056510..5056806 (-) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ILQ44_RS25150 5052979..5054436 + 1458 WP_000856824.1 dipeptide/tripeptide permease DtpC -
ILQ44_RS25155 5054673..5056190 + 1518 WP_001295074.1 lysine--tRNA ligase -
ILQ44_RS25160 5056309..5056482 - 174 WP_001173343.1 type V toxin-antitoxin system toxin GhoT Toxin
ILQ44_RS25165 5056510..5056806 - 297 WP_000398619.1 type V toxin-antitoxin system endoribonuclease antitoxin GhoS Antitoxin
ILQ44_RS25170 5057033..5057305 - 273 WP_000405647.1 N-acetyltransferase -
ILQ44_RS25175 5057317..5057547 - 231 WP_000371704.1 (4Fe-4S)-binding protein -
ILQ44_RS25180 5057728..5059359 + 1632 WP_001216477.1 sensor histidine kinase -
ILQ44_RS25185 5059356..5060075 + 720 WP_000611288.1 two-component system response regulator DcuR -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin GhoT/OrtT

(4-57)

Antitoxin

Endoribonuclease antitoxin GhoS

(5-94)


Sequences

Toxin        


Download         Length: 58 a.a.        Molecular weight: 6555.06 Da        Isoelectric Point: 10.2288

>T176047 WP_001173343.1 NZ_CP062742:c5056482-5056309 [Escherichia coli O157:H7]
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF

Download         Length: 174 bp

>T176047 NZ_CP082346:c3824088-3823789 [Pantoea dispersa]
ATGCAAACGGAACCGGAGTTTGAGTGGGATACCACCAAGGCGGAAACAAATTTCCGCAAGCATGGTATCCGCTTTGAAGT
TGCAGCCCGCGTGTTTGAGGATCCTTTCCACCTGTCGGTGCAGGATCGTTATGAAAATGGGGAATATCGCTGGCAAACCA
TTGGTAATGTTATGGGGCATGTGGTCATTCTGGTGGCCCATACGGTGCGCTTCGAAACAGATGTTGAGCGAATAAGGATT
ATCAGCGCACGCCATGCAACGCGTATTGAGAGGAGGCGCTATGAGCAAAGTCAGGTTTAA

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11467.97 Da        Isoelectric Point: 4.1705

>AT176047 WP_000398619.1 NZ_CP062742:c5056806-5056510 [Escherichia coli O157:H7]
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLNIMTVDDYFRQFYK

Download         Length: 297 bp

>AT176047 NZ_CP082346:c3823808-3823506 [Pantoea dispersa]
ATGAGCAAAGTCAGGTTTAAACGCAGTGAATTACCGCCGCTCACCGATAAGCAACAGGCGGAGCTGGATGCTTTGAGCCG
GAAACAGGACAGCGACATCCAGTGTGATGATATTGCGCCGTTAGATGACAGTTTCTGGCAGGCTGCCGAACGGGGGCGTT
TTTACCGCCCGGTAAAAACCCAGGCTTCGATCAGAATCGATGCGGATATTCTTGAGTGGTTGAAGGCGCCTGGCAAAGGT
TACCAGACGCGCCTCAACGCGATCCTGCGAGCCGCGATGCTAAGAGAACTGCAGGGTAAATAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9QI41

Antitoxin

Source ID Structure
PDB 2LLZ
AlphaFold DB A0A7U9QBH6

References