Detailed information of TA system TA176043

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): ccdAB/CcdA(antitoxin)
• Location: 4708959..4709509
• Replicon: chromosome
• Accession: NZ_CP062742
• Organism: Escherichia coli O157:H7 strain Z1626

Toxin (Protein)

• Gene name: ccdB
• Uniprot ID: D3H432
• Locus tag: ILQ44_RS23600
• Protein ID: WP_001160975.1
• Coordinates: 4708959..4709273 (-)
• Length: 105 a.a.

Antitoxin (Protein)

• Gene name: ccdA
• Uniprot ID: V0VEX8
• Locus tag: ILQ44_RS23605
• Protein ID: WP_000125566.1
• Coordinates: 4709276..4709509 (-)
• Length: 78 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
ILQ44_RS23575	4704634..4705920	+	1287	WP_000800457.1	peptidylprolyl isomerase SurA	-
ILQ44_RS23580	4705920..4706909	+	990	WP_000241259.1	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	-
ILQ44_RS23585	4706906..4707727	+	822	WP_001065380.1	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	-
ILQ44_RS23590	4707730..4708107	+	378	WP_000610901.1	Co2+/Mg2+ efflux protein ApaG	-
ILQ44_RS23595	4708114..4708962	+	849	WP_000257187.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH	-
ILQ44_RS23600	4708959..4709273	-	315	WP_001160975.1	CcdB family protein	Toxin
ILQ44_RS23605	4709276..4709509	-	234	WP_000125566.1	type II toxin-antitoxin system CcdA family antitoxin	Antitoxin
ILQ44_RS23610	4709595..4710074	-	480	WP_000624372.1	type 3 dihydrofolate reductase	-
ILQ44_RS23615	4710266..4712128	-	1863	WP_000377184.1	glutathione-regulated potassium-efflux system protein KefC	-
ILQ44_RS23620	4712121..4712651	-	531	WP_000600700.1	glutathione-regulated potassium-efflux system oxidoreductase KefF	-
ILQ44_RS23625	4712759..4714090	-	1332	WP_001183177.1	MFS transporter	-
ILQ44_RS23630	4714148..4714435	-	288	WP_000203741.1	ferredoxin-like protein FixX	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin CcdB (2-103)

Antitoxin

• Post-segregation antitoxin CcdA (8-77)

Sequences

Toxin

Protein

• Length: 105 a.a.
• Molecular weight: 11711.76 Da
• Isoelectric Point: 9.8517

>T176043 WP_001160975.1 NZ_CP062742:c4709273-4708959 [Escherichia coli O157:H7]
MQFTVYRSRSRNAAFPFVIDVTSDIIGVINRRIVIPLTPIERFSRIRPPERLNPILLLVDGKEYVLMTHETATVPVNALG
TKFCDASAHRTLIKGALDFMLDGI

Nucleotide

• Length: 315 bp

>T176043 NZ_CP082346:2378456-2378638 [Pantoea dispersa]
ATGAAGAGCGCGACGCTGATTAAACTGCTGCAAAAGAATGGCTGGAAGCTGGAGCGCATACGCGGCAGTCATCATCAGTT
CTCACATCCGGATTTAGCTCATCTGATCACCGTGCCGCATCCGCAGAAGGATATGAAGACAGGCACGCTGATGCAGATTC
TGAAAGACGCCAGGCTGGATTGA

Antitoxin

Protein

• Length: 78 a.a.
• Molecular weight: 8530.53 Da
• Isoelectric Point: 5.8062

>AT176043 WP_000125566.1 NZ_CP062742:c4709509-4709276 [Escherichia coli O157:H7]
MTAKRTTQSVTVTVDRELVNRARDAGLNMSATLTVALNAELKKHAATRWREENAEAIAALNQLADETGCFSDEYRSF

Nucleotide

• Length: 234 bp

>AT176043 NZ_CP082346:2378678-2379070 [Pantoea dispersa]
ATGCTGTTTCCCGCTTTGGTAGAGATTGACGCTGACGGCTCGGCCAGTGGTTATTTCCCGGATGTCACCGGCTGTTATTT
TGCCGGTGATACGCCCGAGCAAACGCTGCAGGATGCGCAATCTGCGCTGCATGCCCACTTTGAACTGATGGCGGAGAAAG
GCTTATTGATTCCGGAGCCGGCGCAGCACTGGCAGCAGGAATTTAGCCAGCCTGGCGTGTGGATCTACGTTGATATTGAT
GTCACCCGCTATCTGGGCAAATCCGAGCGCATCAATATCACTATGCCGCATCTGCTGATTGAGAAGATCGATAAGATGGT
CAGTAATAACGCGCGCTACAGCAGCCGCAGCCATTTTCTTGCCGAGGCGGCGCGCAAAGCGCTGGTCTCGTAG

Structures

Antitoxin

• AlphaFold DB: A0A7U9LTM9