Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 4288749..4289367 Replicon chromosome
Accession NZ_CP062725
Organism Escherichia coli O157:H7 strain Z1813

Toxin (Protein)


Gene name Hha Uniprot ID H5UYE2
Locus tag ILQ52_RS21840 Protein ID WP_001291435.1
Coordinates 4289149..4289367 (+) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID S1PTH5
Locus tag ILQ52_RS21835 Protein ID WP_000344800.1
Coordinates 4288749..4289123 (+) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ILQ52_RS21825 4283838..4285031 + 1194 WP_001295324.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -
ILQ52_RS21830 4285054..4288203 + 3150 WP_001132452.1 multidrug efflux RND transporter permease subunit -
ILQ52_RS21835 4288749..4289123 + 375 WP_000344800.1 Hha toxicity modulator TomB Antitoxin
ILQ52_RS21840 4289149..4289367 + 219 WP_001291435.1 hemolysin expression modulator Hha Toxin
ILQ52_RS21845 4289539..4290090 + 552 WP_000102553.1 maltose O-acetyltransferase -
ILQ52_RS21850 4290206..4290676 + 471 WP_000136192.1 YlaC family protein -
ILQ52_RS21855 4290840..4292390 + 1551 WP_001301851.1 cyclic-guanylate-specific phosphodiesterase PdeB -
ILQ52_RS21860 4292432..4292785 - 354 WP_000878140.1 DUF1428 domain-containing protein -
ILQ52_RS21870 4293164..4293475 + 312 WP_000409911.1 MGMT family protein -
ILQ52_RS21875 4293508..4294080 - 573 WP_000779831.1 YbaY family lipoprotein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-117)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T175784 WP_001291435.1 NZ_CP062725:4289149-4289367 [Escherichia coli O157:H7]
MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR

Download         Length: 219 bp

>T175784 NZ_CP082202:1080681-1080947 [Streptococcus suis]
TTGAGTTATAAGGTTATTTTGTCTGCTAAGGCTCAAAAACAAATTCGAAAGATGGATAAAACTGCTGCAAGTTTGATTTT
GCGGTATCTTTACAAGCATATTGACGGGTGCGACAACCCCAGACAATACGGAAAAGCCTTGACAGCAAATCGTTCTGGGC
AATGGCGGTACCGTATCGGAAATTACAGGGTGATCGTCAGTATTGAAGATGATAAATTGATTGTAACTGCCCTTGAAGTC
GGGCAGCGAAAAGAAGTATATAAATAA

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14557.39 Da        Isoelectric Point: 4.7395

>AT175784 WP_000344800.1 NZ_CP062725:4288749-4289123 [Escherichia coli O157:H7]
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAINLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYL
DDTFMLFSSYGINMQDLQKWRKSGNRLFRCFVNATKENPASLSC

Download         Length: 375 bp

>AT175784 NZ_CP082202:1080452-1080691 [Streptococcus suis]
ATGGCAGCTATTACATTGAAAGTTTCTGAGCAGGACAAGCTCTTTATGCAGGCTATGGCAAAGTTTGAAGGTGTGAGTTT
GTCAGAACTCATTCGGACTAAAACCCTTGAAGCCCTTGAAGATGAGTATGATGCGCGTGTGGCAGACATTGCTTGGGTAG
AATACCAAGAAGACTTGGCGAATGGAATTGAGCCGATAACATTAGAACAAATGGCTGAGGAGTTGGGCATTGAGTTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 2MW2
PDB 1JW2

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9QBQ5

References