Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type V Classification (family/domain) ghoTS/ghoT-GhoS
Location 5059309..5059806 Replicon chromosome
Accession NZ_CP062723
Organism Escherichia coli O157:H7 strain Z1814

Toxin (Protein)


Gene name ghoT Uniprot ID L4JJG6
Locus tag ILQ53_RS25210 Protein ID WP_001173343.1
Coordinates 5059309..5059482 (-) Length 58 a.a.

Antitoxin (Protein)


Gene name ghoS Uniprot ID L4JK92
Locus tag ILQ53_RS25215 Protein ID WP_000398619.1
Coordinates 5059510..5059806 (-) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ILQ53_RS25200 5055979..5057436 + 1458 WP_000856824.1 dipeptide/tripeptide permease DtpC -
ILQ53_RS25205 5057673..5059190 + 1518 WP_001295074.1 lysine--tRNA ligase -
ILQ53_RS25210 5059309..5059482 - 174 WP_001173343.1 type V toxin-antitoxin system toxin GhoT Toxin
ILQ53_RS25215 5059510..5059806 - 297 WP_000398619.1 type V toxin-antitoxin system endoribonuclease antitoxin GhoS Antitoxin
ILQ53_RS25220 5060033..5060305 - 273 WP_000405647.1 N-acetyltransferase -
ILQ53_RS25225 5060317..5060547 - 231 WP_000371704.1 (4Fe-4S)-binding protein -
ILQ53_RS25230 5060728..5062359 + 1632 WP_001216477.1 sensor histidine kinase -
ILQ53_RS25235 5062356..5063075 + 720 WP_000611288.1 two-component system response regulator DcuR -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin GhoT/OrtT

(4-57)

Antitoxin

Endoribonuclease antitoxin GhoS

(5-94)


Sequences

Toxin        


Download         Length: 58 a.a.        Molecular weight: 6555.06 Da        Isoelectric Point: 10.2288

>T175755 WP_001173343.1 NZ_CP062723:c5059482-5059309 [Escherichia coli O157:H7]
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF

Download         Length: 174 bp

>T175755 NZ_CP082178:c4035347-4035066 [Xanthomonas fragariae]
ATGATCAGGAGCTTTGTCGACAAGGAAGCCGAAAAGATCTGGATGGGTGAGCGCTCCCGCCGGTTGCCGGCCGACATCCA
GTCGGTCGCGCGCCGCAAGTTGCGCATGCTCAACGCTGCCGCGCACCTCGACGATCTGCGCATTCCGCCTGCCAACCGGC
TGGAAGCGTTGAAGGGCGAGCGGCGCGGGCAGTACAGCATCCGGATCAACGACCAGTGGCGTATCTGCTTCCGATGGATG
GAGGGCGATGTGGCCGAGGTCGAAATTGTCGATTACCACTGA

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11467.97 Da        Isoelectric Point: 4.1705

>AT175755 WP_000398619.1 NZ_CP062723:c5059806-5059510 [Escherichia coli O157:H7]
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLNIMTVDDYFRQFYK

Download         Length: 297 bp

>AT175755 NZ_CP082178:c4035047-4034757 [Xanthomonas fragariae]
ATGACAGTCCTACCCAACATCCACCCTGGTGAAATCCTGCTTGAGGAGTTCCTCGAGCCGATGGGTATCAGCCAGAACGC
ATTGGCGCGGGCCACCGGTGTGCCGCCACGCCGTATCAACGAAATCGTGTTGGGCAAGCGCGGCATCACCGCCGACACCG
CCGTGCGCCTGGCTGCAGCGCTGTGCACGACCGAGCGCTTCTGGCTAGGCCTGCAAGCCGATTACGAGCTGGAACAAGCG
CACCGCGCGCTGGGCGACCTGCCATCGCGGATCAAGCGGCTGGCGGCTTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9QI41

Antitoxin

Source ID Structure
PDB 2LLZ
AlphaFold DB A0A7U9QBH6

References